Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq23 264 2e-65 seq29 260 3e-64 >seq23 Length=2267247 Score = 264 bits (292), Expect = 2e-65 Identities = 574/858 (67%), Gaps = 20/858 (2%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || ||| |||||||||||||||| | ||| |||||| || || ||||||||| Sbjct 1856965 GAAATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACAGCTGAGGAGATTGAT 1857024 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || | |||||||||| | |||| | | ||| |||| ||| || ||| Sbjct 1857025 CTTGGAAAGGACATGGGTGACTGGGAGAACAGACTCAACAACGATGAGCGGTTCTTCATC 1857084 Query 25594 T---ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG 25650 | |||| | ||||||||||| ||||| || ||||| || |||||||| ||| ||| Sbjct 1857085 TCCCACGTTCTCGCATTCTTTGCTGCCTCCGACGGTATCGTTAACGAGAACCTGGTTGAG 1857144 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710 ||||| || | || |||||| | ||||||||||| |||||||| |||||||| Sbjct 1857145 CGATTCTCCGGCGAGGTGCAGGCCCCCGAGGCCAAGTGCTTCTACGGCTTCCAGATCATG 1857204 Query 25711 ATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGAC 25767 || || || | ||||| ||| || | ||| ||||| || ||||| | ||| Sbjct 1857205 ATGGAGAACATCCACTCCGAGACCTACTC---GCTGCTGATCGACACATACATCAAGGAC 1857261 Query 25768 GTCGCCGAGAGAGATCGG--CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGA 25825 | | |||| || | ||||| ||||||||| ||| ||| ||||||||| | Sbjct 1857262 --CCCAAAGAGCGAACCTACCTGTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAAA 1857319 Query 25826 AGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTTGGCGAGCGGCTG 25884 |||| |||||| | ||||||||| | | | || | | || ||||| ||||| || Sbjct 1857320 AGGCCGACTGGGCCCTCAAGTGGATCTCCGACGA-AGAGTCCACCTTTGGAGAGCGACTC 1857378 Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 | |||||||| || || ||||||||||| ||| ||| || || || ||||||||||| Sbjct 1857379 ATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTGG 1857438 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004 |||||| || || |||||| || || ||| ||||||||||||||| | | ||| Sbjct 1857439 CTCAAGAAGCGAGGTCTCATGCCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGAGAC 1857498 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCT 26064 |||||||| |||| || |||||||||||||| | | || ||| | || ||| Sbjct 1857499 GAGGGTCTGCACACTGACTTTGCCTGCCTGCTTTTCTCG---CACCTTGAGAACCGACCC 1857555 Query 26065 TCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNN 26124 || | ||| || | |||| |||||||| | |||||| ||||||| | Sbjct 1857556 TCAAAGAAGATTGTTGAGGACGTCATTGTCGAGGCTGTTGGCATCGAGCAGGAGTTCCTT 1857615 Query 26125 NNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATT 26184 | || |||||| || || ||| |||| ||||| Sbjct 1857616 ACTGACGCTCTGCCCTGTGGTCTGCTTGGTATGAACGCCAAGCTGATGTGCCAGTACATC 1857675 Query 26185 GAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCC 26243 |||| ||| || |||| |||||| || | || || | ||| | || | | | Sbjct 1857676 GAGTTTGTCGCTGACCGTCTGCTAGTTGC-TCTCGGTAACTCCAAGGTGTATAACTCCAC 1857734 Query 26244 TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAA 26303 ||||| |||||||| ||||| ||||| || ||| || ||||||||||| || || || Sbjct 1857735 CAACCCCTTCGACTTCATGGAGAACATCTCTCTGGCCGGCAAGACCAACTTTTTCGAGAA 1857794 Query 26304 GAGGGTCGGCGACTATCA 26321 | | || |||||| || Sbjct 1857795 GCGAGTGTCCGACTACCA 1857812 >seq29 Length=2752704 Score = 260 bits (288), Expect = 3e-64 Identities = 936/1444 (65%), Gaps = 31/1444 (2%) Strand=Plus/Plus Query 221427 CGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAGG 221486 |||||||||||||||| |||||| ||||||| |||||||||| || || | Sbjct 57481 CGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCCTCGGACTCAAATG 57540 Query 221487 GCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGT 221546 | | || || | ||| ||||||||| ||||| || || | | | ||||| | || Sbjct 57541 GGAGTCGTAGAGCCATGAAGGTGTCGGCCAGACCCTGGACACCCAGAGCAATGGGTCGGT 57600 Query 221547 GTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGT 221606 ||| | |||| || || || || || || || |||| |||||| | | || Sbjct 57601 GTCGCATGTTAGACTTCTTGGCCTCGGGGACCGGGTAGTAGTTTCGGTCGATGATAGCGT 57660 Query 221607 TGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACT 221666 ||||||| | ||||| || | | ||| |||||||| | | | | | | | | Sbjct 57661 TGAGGTTTCGCACAATGACCTTGGCAATGTCGTGCAGCTTCTTGAAGTCGTAGAACGAGT 57720 Query 221667 CGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACA 221726 | | |||| | ||| ||||||| | || || | | |||||||| || | Sbjct 57721 TGGTGTCGTC-TCGAGTA-----ACAAAAGTGGGCAGAGCGATGGAAGCCAGGTTGCAGA 57774 Query 221727 CGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGA 221786 | || ||||| || | |||| || ||||| || ||||| |||| | Sbjct 57775 CAGCGACCTCATCAGGAGAAGAGTACTCTACAATCTCACAGCACAGGTTAGAAGACTTAA 57834 Query 221787 TGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGG 221846 | || || |||| || || || ||||| || ||| | ||||||||| ||||| |||| Sbjct 57835 TTGTTCCGAGGTTCTTCTGGTTGGACTTTCGGTTGCAGGAGTCCTTGTACAGCATGAAGG 57894 Query 221847 GACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG-CGCTCACC 221905 | ||| | ||| ||| | ||||| | || ||| || | ||||| | | Sbjct 57895 GGTTGCCGGACTCGGTCTGGCAGTCGAGAATGTGGTACCACAGCT-TCTGGGCAGGGATG 57953 Query 221906 GTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCA 221965 || | | || ||||| ||| | | | || || ||| | ||||| ||| Sbjct 57954 GTTCGTCGGCCTCGGCCCTCCTTCTCGTACTGCTCG---TACAGCTGCTTAAACTCATCA 58010 Query 221966 CCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTG 222025 || || | ||||| || || || ||| | ||| |||||||| |||| | ||| Sbjct 58011 CCATAGACGTCGTCAAGACCGGGGCACTCGTTGGGGCACATCAGGGTCCATTCAGCGTTC 58070 Query 222026 TCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTC 222085 | | ||| | || |||||| ||||| ||||||||||| ||| | || || |||| || Sbjct 58071 TGCTCGACTCGCTCCATGAACAGGTCGGGGATCCACAGAGCCAGGAACAGGTCTCGGGCT 58130 Query 222086 CGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGC 222145 || ||| ||| |||| ||| || | ||| || | ||||| || || || ||||| Sbjct 58131 CGAATCTCTTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGATATCGTCGTGC 58190 Query 222146 CACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACC-AT 222204 || ||||| || || | || | || || |||||||||||||| |||||||| || || Sbjct 58191 CAGGGCTCAAGGTACATTGCAAAGGCACCAGGTCGCTTGTTGCCTCCCTGATCAACGTAT 58250 Query 222205 CCTCTCCAGAGC-GTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGG 222263 | | | | ||| ||| || || | || || | |||||||| ||||| | Sbjct 58251 CGGG--CGGTGTTGTTATAGACACGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTAG 58308 Query 222264 TGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATACCACCGG 222323 | || |||||| | || || | | ||| | ||||| |||||||| |||| Sbjct 58309 TTCCAGCAATGTAGGAGCCAGTAGCTCGGATGTTGTGGATAGACAGACCGATACCGCCGG 58368 Query 222324 CGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCT 222383 | || || |||| || ||| | ||||| || || |||||| || || ||||| | Sbjct 58369 CAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAGATGCCGTCGATGGAGTCGT 58428 Query 222384 CCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACA 222443 |||| | ||| | || ||||| ||||||||||||| | || | | |||||| | | Sbjct 58429 CCTTCATGTTGACAAGGAAACACGACGACATCTGAGGCTGGGGAGTTCCGGCGTTGTAGA 58488 Query 222444 GCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTC 222503 | ||||| ||||| || ||||| | |||||| | ||| ||||| | | | | Sbjct 58489 GAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGACATATAGTTGTAGGTCTCAATGGCCC 58548 Query 222504 TGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCT 222563 ||| |||||||| ||||| || | | | || |||| ||| | ||||| | || Sbjct 58549 GGGCAATGTTGTCGCCGTGGATACCGACAGAGACTCGCATGATCATCTGTTGGGGTCGCT 58608 Query 222564 ---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAA 222620 | |||| ||| ||| || | |||||||| | | ||||| |||||||| |||| Sbjct 58609 CGGCAACAGCACCGTTG--ACTCG-CAGCAGGTATGCTCGCTCCAGGGTCTTGAAGCCAA 58665 Query 222621 AGTAGTTG-AGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGCTC--CGAC-TTG 222676 |||||||| |||| ||||||| | ||| | | |||| ||| ||||| || | ||| Sbjct 58666 AGTAGTTGTAGGT-GAAGTCTCGGTCGTAGAGAATGGCGCCGTTGAGCTCGTCGGCGTTG 58724 Query 222677 TGCTTTACGCTCAACTCGAAAAAGCGCTCAGACACGAGGGGAGCGTTCTCTTTGGTGTCG 222736 || ||| | ||| | | || || || | ||| | || || ||| | | Sbjct 58725 GCCTGCACGGT---GTCGTACAGCTCCTTGGAGACCATGGGCGAGTGCTTCTTGTTTCGG 58781 Query 222737 GGGTTAACGTTGTGGTACAGCTGCCACATGGCATCAGAGAAC-GTGTCGGGAGTCTGCTT 222795 ||||| |||| |||||||| | | | | | |||||| | || | |||||||| Sbjct 58782 GGGTTCACGTAGTGGTACAAGTCGTAAACCACCTGCGAGAACTGCTTCTTG-GTCTGCTT 58840 Query 222796 GTGCAGATTCGACACGGCGATCCGAGACGCCAAGATACCATAGTCAGGGTGCACGGTGGT 222855 ||||| || ||||| ||||| || | |||| || |||||||||| |||| ||||| Sbjct 58841 ATGCAGGTTGGACACAGCGATTCGGGCAGCCAGAATCGCATAGTCAGGATGCAGAGTGGT 58900 Query 222856 CATG 222859 |||| Sbjct 58901 CATG 58904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844463293760