Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq14 156 3e-32 seq9 93.3 3e-13 >seq14 Length=2997610 Score = 156 bits (172), Expect = 3e-32 Identities = 370/552 (67%), Gaps = 8/552 (1%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTG-TTTGGCAAAATGGTAA 474387 ||| | || || ||| | ||||| || ||| ||||| || ||| || || || | Sbjct 31944 GCAGTAGGAATCGATCTTGGAACCACATACTCCTGTGTGGCCCATTTCGCCAA-TGACAG 32002 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| ||||| || ||||||||||| || || ||||| || || || | ||| | ||||| Sbjct 32003 AGTCGAAATCATCGCCAATGACCAGGGAAACAGAACCACTCCCTCGTTTGTGGCCTTTAC 32062 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || ||||||| || ||||| |||||||| || | || ||||| || |||| || Sbjct 32063 CGACACTGAACGACTCATTGGTGATGCTGCCAAGAACCAGGCTGCCATGAACCCTGCAAA 32122 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 || | ||||| || || || ||||||| || || || || || | ||||| Sbjct 32123 CACAGTATTTGACGCCAAGCGACTGATTGGCCGAAAATTCGACGACCCTGAGGTCCAGAA 32182 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC 474627 || || | || || ||| | || || | ||| || ||| | || || | Sbjct 32183 CGACGCCAAGCACTTCCCCTTCAAGATTATCGATAAGGCTGGAAAGCCAAACATCGAGGT 32242 Query 474628 --AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 ||| || | || ||||| || || | || ||| | || ||||| ||| | | Sbjct 32243 CGAATTCAAG--GGCGAAACCAAGGTCTTCACCCCCGAAGAGATCTCTTCCATGATCCTC 32300 Query 474686 GCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAAT 474744 |||| ||||| |||| || ||| ||| |||||| | | || | || || || || Sbjct 32301 ACCAAGATGAAGGAAACTGCTGAGGG-ATACCTTGGAACAAAGGTGAACGACGCTGTCAT 32359 Query 474745 TACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAAT 474804 ||| ||||| ||||| || ||||||||||| || || || || || || || || || Sbjct 32360 TACCGTTCCCGCATACTTCAATGATTCTCAGCGACAGGCCACCAAGGACGCAGGTCTTAT 32419 Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 ||| ||||| |||||| | ||||| || || || || || ||||| |||| || || Sbjct 32420 TGCTGGTCTGAATGTTCAGAGAATTATCAACGAGCCTACCGCTGCCGCCATTGCCTACGG 32479 Query 474865 TCTTGATAAGAA 474876 ||| |||||||| Sbjct 32480 TCTCGATAAGAA 32491 Score = 89.7 bits (98), Expect = 3e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 ||||| ||||| ||||| || ||||||||||| || || || || || || || || Sbjct 27031 ATTACCGTTCCCGCATACTTCAATGATTCTCAGCGACAGGCCACCAAGGACGCAGGTCTT 27090 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 ||||| ||||| |||||| | ||||| || || || || || ||||| |||| || Sbjct 27091 ATTGCTGGTCTGAATGTTCAGAGAATTATCAACGAGCCTACCGCTGCCGCCATTGCCTAC 27150 Query 474863 GGTCTTGATAAGAA 474876 ||||| |||||||| Sbjct 27151 GGTCTCGATAAGAA 27164 >seq9 Length=1942798 Score = 93.3 bits (102), Expect = 3e-13 Identities = 121/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 474713 TATCTTGGACAAGAAG-TAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTC 474771 || |||||| | |||| | | || || || ||||| ||||| ||||| || |||||||| Sbjct 16501 TACCTTGGA-ACGAAGGTGAACGACGCTGTTATTACCGTTCCCGCATACTTCAATGATTC 16559 Query 474772 TCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTAT 474831 ||| || || || || || || || || ||||| ||||| |||||| | ||||| Sbjct 16560 TCAGCGACAGGCCACCAAGGACGCAGGTCTTATTGCTGGTCTGAATGTTCAGAGAATTAT 16619 Query 474832 TAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || || || || ||||| |||| || ||||| |||||||| Sbjct 16620 CAACGAGCCTACCGCTGCCGCCATTGCCTACGGTCTCGATAAGAA 16664 Score = 89.7 bits (98), Expect = 3e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 ||||| ||||| ||||| || ||||||||||| || || || || || || || || Sbjct 17383 ATTACCGTTCCCGCATACTTCAATGATTCTCAGCGACAGGCCACCAAGGACGCAGGTCTT 17442 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 ||||| ||||| |||||| | ||||| || || || || || ||||| |||| || Sbjct 17443 ATTGCTGGTCTGAATGTTCAGAGAATTATCAACGAGCCTACCGCTGCCGCCATTGCCTAC 17502 Query 474863 GGTCTTGATAAGAA 474876 ||||| |||||||| Sbjct 17503 GGTCTCGATAAGAA 17516 Score = 87.8 bits (96), Expect = 1e-11 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTG-TTTGGCAAAATGGTAA 474387 ||| | || || ||| | ||||| || ||| ||||| || ||| || || | | Sbjct 15898 GCAGTAGGAATCGATCTTGGAACCACATACTCCTGTGTGGCCCATTTCGCCAAC-GACAG 15956 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| ||||| || ||||||||||| || || ||||| || || || | ||| | ||||| Sbjct 15957 AGTCGAAATCATCGCCAATGACCAGGGAAACAGAACCACTCCCTCGTTTGTGGCCTTTAC 16016 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || ||||||| || ||||| |||||||| || | || || || || |||| || Sbjct 16017 CGACACTGAACGACTCATTGGTGATGCTGCCAAGAACCAGGCAGCCATGAACCCTGCAAA 16076 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGA 474552 || | ||||| || || || ||||||| || || || || || Sbjct 16077 CACAGTCTTTGACGCCAAGCGACTGATTGGCCGAAAATTCGACGA 16121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268177956049292