Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22]
29 sequences; 20,590,669 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq14 156 3e-32
seq9 93.3 3e-13
>seq14
Length=2997610
Score = 156 bits (172), Expect = 3e-32
Identities = 370/552 (67%), Gaps = 8/552 (1%)
Strand=Plus/Plus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTG-TTTGGCAAAATGGTAA 474387
||| | || || ||| | ||||| || ||| ||||| || ||| || || || |
Sbjct 31944 GCAGTAGGAATCGATCTTGGAACCACATACTCCTGTGTGGCCCATTTCGCCAA-TGACAG 32002
Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447
||| ||||| || ||||||||||| || || ||||| || || || | ||| | |||||
Sbjct 32003 AGTCGAAATCATCGCCAATGACCAGGGAAACAGAACCACTCCCTCGTTTGTGGCCTTTAC 32062
Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507
|| ||||||| || ||||| |||||||| || | || ||||| || |||| ||
Sbjct 32063 CGACACTGAACGACTCATTGGTGATGCTGCCAAGAACCAGGCTGCCATGAACCCTGCAAA 32122
Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567
|| | ||||| || || || ||||||| || || || || || | |||||
Sbjct 32123 CACAGTATTTGACGCCAAGCGACTGATTGGCCGAAAATTCGACGACCCTGAGGTCCAGAA 32182
Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC 474627
|| || | || || ||| | || || | ||| || ||| | || || |
Sbjct 32183 CGACGCCAAGCACTTCCCCTTCAAGATTATCGATAAGGCTGGAAAGCCAAACATCGAGGT 32242
Query 474628 --AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685
||| || | || ||||| || || | || ||| | || ||||| ||| | |
Sbjct 32243 CGAATTCAAG--GGCGAAACCAAGGTCTTCACCCCCGAAGAGATCTCTTCCATGATCCTC 32300
Query 474686 GCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAAT 474744
|||| ||||| |||| || ||| ||| |||||| | | || | || || || ||
Sbjct 32301 ACCAAGATGAAGGAAACTGCTGAGGG-ATACCTTGGAACAAAGGTGAACGACGCTGTCAT 32359
Query 474745 TACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAAT 474804
||| ||||| ||||| || ||||||||||| || || || || || || || || ||
Sbjct 32360 TACCGTTCCCGCATACTTCAATGATTCTCAGCGACAGGCCACCAAGGACGCAGGTCTTAT 32419
Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864
||| ||||| |||||| | ||||| || || || || || ||||| |||| || ||
Sbjct 32420 TGCTGGTCTGAATGTTCAGAGAATTATCAACGAGCCTACCGCTGCCGCCATTGCCTACGG 32479
Query 474865 TCTTGATAAGAA 474876
||| ||||||||
Sbjct 32480 TCTCGATAAGAA 32491
Score = 89.7 bits (98), Expect = 3e-12
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802
||||| ||||| ||||| || ||||||||||| || || || || || || || ||
Sbjct 27031 ATTACCGTTCCCGCATACTTCAATGATTCTCAGCGACAGGCCACCAAGGACGCAGGTCTT 27090
Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862
||||| ||||| |||||| | ||||| || || || || || ||||| |||| ||
Sbjct 27091 ATTGCTGGTCTGAATGTTCAGAGAATTATCAACGAGCCTACCGCTGCCGCCATTGCCTAC 27150
Query 474863 GGTCTTGATAAGAA 474876
||||| ||||||||
Sbjct 27151 GGTCTCGATAAGAA 27164
>seq9
Length=1942798
Score = 93.3 bits (102), Expect = 3e-13
Identities = 121/165 (73%), Gaps = 2/165 (1%)
Strand=Plus/Plus
Query 474713 TATCTTGGACAAGAAG-TAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTC 474771
|| |||||| | |||| | | || || || ||||| ||||| ||||| || ||||||||
Sbjct 16501 TACCTTGGA-ACGAAGGTGAACGACGCTGTTATTACCGTTCCCGCATACTTCAATGATTC 16559
Query 474772 TCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTAT 474831
||| || || || || || || || || ||||| ||||| |||||| | |||||
Sbjct 16560 TCAGCGACAGGCCACCAAGGACGCAGGTCTTATTGCTGGTCTGAATGTTCAGAGAATTAT 16619
Query 474832 TAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876
|| || || || || ||||| |||| || ||||| ||||||||
Sbjct 16620 CAACGAGCCTACCGCTGCCGCCATTGCCTACGGTCTCGATAAGAA 16664
Score = 89.7 bits (98), Expect = 3e-12
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802
||||| ||||| ||||| || ||||||||||| || || || || || || || ||
Sbjct 17383 ATTACCGTTCCCGCATACTTCAATGATTCTCAGCGACAGGCCACCAAGGACGCAGGTCTT 17442
Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862
||||| ||||| |||||| | ||||| || || || || || ||||| |||| ||
Sbjct 17443 ATTGCTGGTCTGAATGTTCAGAGAATTATCAACGAGCCTACCGCTGCCGCCATTGCCTAC 17502
Query 474863 GGTCTTGATAAGAA 474876
||||| ||||||||
Sbjct 17503 GGTCTCGATAAGAA 17516
Score = 87.8 bits (96), Expect = 1e-11
Identities = 156/225 (69%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTG-TTTGGCAAAATGGTAA 474387
||| | || || ||| | ||||| || ||| ||||| || ||| || || | |
Sbjct 15898 GCAGTAGGAATCGATCTTGGAACCACATACTCCTGTGTGGCCCATTTCGCCAAC-GACAG 15956
Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447
||| ||||| || ||||||||||| || || ||||| || || || | ||| | |||||
Sbjct 15957 AGTCGAAATCATCGCCAATGACCAGGGAAACAGAACCACTCCCTCGTTTGTGGCCTTTAC 16016
Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507
|| ||||||| || ||||| |||||||| || | || || || || |||| ||
Sbjct 16017 CGACACTGAACGACTCATTGGTGATGCTGCCAAGAACCAGGCAGCCATGAACCCTGCAAA 16076
Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGA 474552
|| | ||||| || || || ||||||| || || || || ||
Sbjct 16077 CACAGTCTTTGACGCCAAGCGACTGATTGGCCGAAAATTCGACGA 16121
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268177956049292
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |