Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq23 145 9e-30 seq19 87.8 2e-12 >seq23 Length=2267247 Score = 145 bits (160), Expect = 9e-30 Identities = 348/520 (67%), Gaps = 16/520 (3%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || | || || || |||| ||||| | ||||| | || ||| | | Sbjct 1857289 GCCATCGAGACCATCCCCTGCATCAAGAAAAAGGCCGACTGGGCCCTCAAGTGGATCTCC 1857348 Query 65056 -ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114 || ||| || | |||| | ||||| || |||| ||||| || ||||| ||||| Sbjct 1857349 GACGAAGAGTC-CACCTTTGGAGAGCGACTCATTGCCTTTGCCGCCGTCGAGGGCATCTT 1857407 Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 ||||||||| || ||| | | || | ||| | |||||||| ||||||||||| ||||| Sbjct 1857408 CTTCTCCGGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGCCT 1857467 Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGA 65234 |||||| || || || || |||||||| |||||||| ||| || |||||| Sbjct 1857468 CACCTTCTCCAACGAGCTCATCTCCCGAGACGAGGGTCTGCACACTGACTTTGCCTGCCT 1857527 Query 65235 GCTCTTCAAG-ACTTTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAG 65293 ||| ||| | || ||| | || ||||| | | | | | | | | | || | | Sbjct 1857528 GCTTTTCTCGCACCTTGAG-AACCGACCCTCAAAGAAGATTGTTGAGGACGTCATTGTCG 1857586 Query 65294 AGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTA 65353 |||| |||| || ||| | | |||| | ||||| || || ||| ||| | |||| Sbjct 1857587 AGGCTGTTGGCATCGAGCAGGAGTTCCTTACTGACGCTCTGCCCTGTGGTCTGCTTGGTA 1857646 Query 65354 TGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAG 65413 ||||| | || ||||| | ||||||| |||| ||| | || ||||| || || Sbjct 1857647 TGAACGCCAAGCTGATGTGCCAGTACATCGAGTTTGTCGCTGACCGTCTGCT------AG 1857700 Query 65414 TTG----GGGTGCCACCCA--TTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACA 65467 ||| ||| | || | | | ||| | | || || || ||||| ||||| |||| Sbjct 1857701 TTGCTCTCGGTAACTCCAAGGTGTATAACTCCACCAACCCCTTCGACTTCATGGAGAACA 1857760 Query 65468 TTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGT 65507 | || | || ||||||||||| || ||||||||||| Sbjct 1857761 TCTCTCTGGCCGGCAAGACCAACTTTTTCGAGAAGCGAGT 1857800 >seq19 Length=1292317 Score = 87.8 bits (96), Expect = 2e-12 Identities = 200/294 (68%), Gaps = 8/294 (3%) Strand=Plus/Minus Query 13605 AGTGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCT 13664 |||| || |||||| |||| ||||| || || || | ||| | ||| || || || | Sbjct 507004 AGTGCACGCTCATTCTCACTGAGGGAGACTCCGCCATGACCATGGCGAACGCTGGACTGT 506945 Query 13665 CTGTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAA-ATGTAAGAATGTT 13723 |||| ||||||| || | || || | || || || || ||||| ||| || || Sbjct 506944 CTGTGATTGGTCGAGAACGATATGGCGCCTTTCCTCTGCGTGGTAAGATGCTC-AACGTG 506886 Query 13724 CGGGACGCTTCGGTGGCACAGCTCACATCAAACCAGGAGTTCAACGATCTCAAGAAGATC 13783 || || || || || ||| ||| ||| ||| || | | | ||||| ||||| Sbjct 506885 CGAGAGGCGTCCACGGACCAGATCATGAAGAACGCCGAGATCCAGGCTATCAAGGAGATC 506826 Query 13784 CTTGGTCTTCA--ACAAGGAAAAGACTAC-CAAGATGTTTCTGAACTTCGCTATGGTCGT 13840 | ||||| || ||||| || ||||| | || || || || || || || | | Sbjct 506825 ATCGGTCTGCAGCACAAG--AAGCACTACACGAGCTGCAAG-GACCTGCGATACGGGCAT 506769 Query 13841 CTTATGATTATGACAGATGCCGATAATGATGGTTCTCACATCAAGGGTCTCATC 13894 || ||||| ||||| ||| ||| |||||||||| |||||||||||||| ||| Sbjct 506768 CTGATGATCATGACCGATCAGGATCATGATGGTTCCCACATCAAGGGTCTGATC 506715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569383743520