Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22]
29 sequences; 20,590,669 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq29 158 4e-33
seq13 102 2e-16
seq23 89.7 2e-12
seq7 84.2 6e-11
>seq29
Length=2752704
Score = 158 bits (174), Expect = 4e-33
Identities = 572/882 (65%), Gaps = 21/882 (2%)
Strand=Plus/Plus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
||| ||||||||||||||||||||||||||| ||| || || || | |||||||||||
Sbjct 57797 GTACTCTACAATCTCACAGCACAGGTTAGAAGACTTAATTGTTCCGAGGTTCTTCTGGTT 57856
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
|| || | ||| || | |||||||| || ||| | ||| | || | ||| ||||
Sbjct 57857 GGACTTTCGGTTGCAGGAGTCCTTGTACAGCATGAAGGGGTTGCCGGACTCGGTCTGGCA 57916
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGT-TGTATCTGCCTTCCG 155808
||| ||||| | ||| || | ||||| | | | | || | || ||| |||
Sbjct 57917 GTCGAGAATGTGGTACCACAGCTTCTGGGCAGGGA-TGGTTCGTCGGCCTCGGCCCTCCT 57975
Query 155809 ACTCATATTTCATATACAGCGTTCGGTAA-TCCTCACCGTAACAATCACTCAGTCCAGGG 155867
||| || | | |||||| | | || || ||||| || || || || |||
Sbjct 57976 TCTCGTACTGCTCGTACAGC-TGCTTAAACTCATCACCATAGACGTCGTCAAGACCGGGG 58034
Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTA--TTACCGAT-TACACGCTCCATAAAT 155924
|||| | |||||| | ||| | ||| || | | | | | || |||||||| ||
Sbjct 58035 CACTCGTTGGGGCACATCAGGGTCCA---TTCAGCGTTCTGCTCGACTCGCTCCATGAAC 58091
Query 155925 ACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGA--CTCCTCATCGCCGT 155982
| || ||| | ||| ||| ||||| | || | || ||| || | ||||
Sbjct 58092 AGGTCGGGGATCCACAGAGCCAGGAACAGGTCTCGGGC--TCGAATCTCTTCCTTTCCGT 58149
Query 155983 GATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAG 156042
| ||||| || ||||| |||| || ||||| || ||||| || ||||| |
Sbjct 58150 GGTTCTTTCGCAGCTCGCAGAACTCGAAGATATCGTCGTGCCAGGGCTCAAGGTACATTG 58209
Query 156043 CAAAACTACCA---TTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGA 156099
|||| |||| | | ||||| |||||||| || || || || || || || |||
Sbjct 58210 CAAAGGCACCAGGTCGCTTGTTGCCTCCCTGATCAACGTATCGGGCGGTGTTGTTATAGA 58269
Query 156100 CACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAG 156159
||| ||||| || | ||||| ||||| || || || ||||| ||| | || ||||
Sbjct 58270 CACGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTAGTTCCAGCAATGTAGGAGCCAG 58329
Query 156160 ATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGC 156219
| || | || || ||| || || ||||| || | | || ||||| |||| |
Sbjct 58330 TAGCTCGGATGTTGTGGATAGACAGACCGATACCGCCGGCAGACTTGGAAATCAGAGCAC 58389
Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCA--TTGATAGTAGATA 156277
| || | |||| | | || || || || || || || | || |||| | || |
Sbjct 58390 AGGTTTTGAGGGTATCGTAGATGCCGTCGATGGAGTCGTCCTTCATGTTGACA--AGGAA 58447
Query 156278 GCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAAT 156337
||||| | ||||| | || ||||| |||||| | || || || | || ||| |
Sbjct 58448 ACACGACGACATCTGAGGCTGGGGAGTTCCGGCGTTGTAGAGAGTGGGGGAAGCGTGAGT 58507
Query 156338 AAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTG 156397
|| ||||| | ||||||||| | ||| ||||| | | ||| || |||||
Sbjct 58508 GAAGTACTTCTGAGACATATAGTTGTAGGTCTCAATGGCCCGGGCAATGTTGTCGCCGTG 58567
Query 156398 AATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAAT 156457
|||| || |||||| | ||| ||| || || || ||||| ||| | || | |
Sbjct 58568 GATACCGACAGAGACTCGCATGATCATCTGTTGGGGTCGCTCGGCAACAGCACCGTTGAC 58627
Query 156458 TCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499
|||||| |||||||| || ||||| || || || || || ||
Sbjct 58628 TCGCAGCAGGTATGCTCGCTCCAGGGTCTTGAAGCCAAAGTA 58669
>seq13
Length=841849
Score = 102 bits (112), Expect = 2e-16
Identities = 129/177 (73%), Gaps = 8/177 (5%)
Strand=Plus/Plus
Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544
|| || || | |||||||||||| ||||||||||| ||||| || |||||||| || |||
Sbjct 376771 GCTCCATGGGCAATCATACAATCTCGCTCCATTTCTCCGAATCGCAGACCACCCTCTCGA 376830
Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACC----GATGGAGCGGCT 251600
| | ||||||| | ||||| || || ||| | || |||||| | | |||||
Sbjct 376831 GATCGACCCTCGACGGGCTGTCGGGTCAGAATTTGCACAGGACCACGTGCTCGAGCG--- 376887
Query 251601 ATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAA 251657
|| ||| |||| |||||||| |||||||||||| | | |||||| | |||
Sbjct 376888 -TGGATCTTGTCATCCACCATATGACGCAGACGCTGGTAGTAAGTGGGACCCAAGAA 376943
>seq23
Length=2267247
Score = 89.7 bits (98), Expect = 2e-12
Identities = 104/140 (74%), Gaps = 3/140 (2%)
Strand=Plus/Minus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
||||| || | | |||||| ||||| | || ||||| |||||||| ||||||||
Sbjct 939707 AGAATCTCCTTGAGACGGGGCACACCGAGCGTCACGTT---CTTGGACGACACACCAGCG 939651
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
| ||||| || ||||| || | ||||||| ||||| ||||| || || |||||
Sbjct 939650 TAATGGAAGGTGTTCAGTGTCATCTGAGTAGCGGGCTCTCCAATGGACTGGGCAGCAATA 939591
Query 301933 ATACCAACCATTTCTCCTGG 301952
| ||||||||||||||| ||
Sbjct 939590 ACACCAACCATTTCTCCAGG 939571
>seq7
Length=4019465
Score = 84.2 bits (92), Expect = 6e-11
Identities = 118/166 (71%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 251496 AATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTC 251555
||| | |||||| ||||||||||| || | ||| ||||||||||| |||| | ||| ||
Sbjct 928490 AATAACACAATCTCGCTCCATTTCTCCCAGACGCAGACCACCATCTCGAGATCGACCTTC 928549
Query 251556 GGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTATCATT 251615
|| ||||| ||||||||| | |||||| || || ||| |||||| |
Sbjct 928550 GGTGGGCTGTCGAGTGAGAACCGCTCGAGGACCTCGGGGTCGAGCATGCATCTTATCCAT 928609
Query 251616 TACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATG 251661
||||||||||| || ||| ||| | ||| || | |||||||
Sbjct 928610 AACCATATGCTTCAGCTTCTGATAGTAGATGGGGCCAAAGAAGATG 928655
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471817053127773
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |