Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq13 158 1e-33 seq29 118 1e-21 >seq13 Length=841849 Score = 158 bits (174), Expect = 1e-33 Identities = 499/764 (65%), Gaps = 16/764 (2%) Strand=Plus/Minus Query 138153 TTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCC 138212 ||| || |||||||||| || |||| ||| || || ||||||||||||||||| || Sbjct 423359 TTTGTCCACAGTAAACTGGATAGCATGAGCAGCAGGCGGAGTTCTCAGATAATACATGCC 423300 Query 138213 CGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTA----ACGCGTAAG 138268 ||||| | ||| | |||| | | | || || | |||| | | |||||| Sbjct 423299 TGTTTTAAGTCCAGCCTTCCAGCCATGGAAATGCATGGCTGTGATTTTTCCATGCGTAA- 423241 Query 138269 TCGGTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAG-CGCCTCGATCA 138327 || | | || || ||||||| ||| || || || ||| | | |||| || || Sbjct 423240 TC---TCAGGCATGAAAATGTTAAGCGACTGGGATTGGTCAATGTAGGGCGCC-CGTGCA 423185 Query 138328 ATGGCCATGTTAATTAAATTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGA 138387 ||||| | ||| | ||| || || |||||| | || |||| | | || Sbjct 423184 GCAGCCATATCAATGATATTACGGGCCTTGATTTCCCACGCAGTTCTGTACACGGCTCGG 423125 Query 138388 ATATGTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTT 138447 || ||| ||||| | || | || || |||||| | ||||||||| ||| Sbjct 423124 ATGTGTTCGGGTATCTGGGTGATGCTCTGGATCGAGCCGTTGTCGTGAATGATGCGGTTT 423065 Query 138448 CTCATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATG 138507 |||| || ||| | ||| || ||||| | || || ||||| | ||| | Sbjct 423064 TTCATCTCCTCGGTCCACATGCCCAGTTTGATTAGATCTTTCATCAGCCACTGGTTCACC 423005 Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 || |||| ||||| ||| || ||||||| |||||||||| ||| | || || || Sbjct 423004 ACGAGAAACTCACCAGCCTGGACCCGACGAAGGTAAATGTTGGACGTGTACGGTTCGAAA 422945 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 | ||||||| ||||||||||| | |||| || || |||||| || || | ||| Sbjct 422944 CACTCGTTGTGGCCCAGAATCTGCGATGTGGAAGCTGTAGGCATGGGGGCAACAAGTAGA 422885 Query 138628 GAATTCCGTAAACCGTG--AAGCTTGATTCGTTCCTTGA-GCGACGACCAGTCCCACAAA 138684 || || || | |||||| || | || || ||||| |||| | ||| ||||| | | Sbjct 422884 GAGTTTCGCATACCGTGTTTGGCGAGCTTGGT--CTTGAGGCGA-GCCCAATCCCAGAGA 422828 Query 138685 TCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCT 138744 || ||| | |||||||||| ||| |||| | | ||||| ||| |||||||||||| Sbjct 422827 TCCGACGGTGTCTTGTTCCACAGATCAAACTGCAGCTTTCCCTGACTGGCGGGACTGCCT 422768 Query 138745 TCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCA 138804 || || | || || || || || |||| |||| | ||||| || || Sbjct 422767 TCATAGGTCTCATAGGGTCCCAATTCAGCGGCCAGCTCGATAGATGCCTCACAGGCTGCA 422708 Query 138805 TAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGC 138864 | |||||| ||||| || | ||| | | | ||||||| ||| ||||| ||| Sbjct 422707 TGGTAAATGGTTTCAAAGATGAGAACATTCAACTCTGCAGCCTCGGGGCTGTCGTAGGGC 422648 Query 138865 ATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCAC 138908 || || ||| || | ||| |||| ||||| || || || ||||| Sbjct 422647 ATTCGTAGCTTCATAAACACGTCAGCCAGGCCCTGAACACCCAC 422604 >seq29 Length=2752704 Score = 118 bits (130), Expect = 1e-21 Identities = 455/712 (64%), Gaps = 11/712 (2%) Strand=Plus/Plus Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACA 139361 |||||||| ||||| || | | || ||||| ||| |||| |||| || | || Sbjct 57977 CTCGTACTGCTCGTACAGCTGCTTAAACTCATCACCATAGACGTCGTCAAGACCGGGGCA 58036 Query 139362 CTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATC 139421 || || || ||||| || | |||| | ||||| || ||| ||| ||||||||| || Sbjct 58037 CTCGTTGGGGCACATCAGGGTCCATTCAGCGTTCTGCTCGACTCGCTCCATGAACAGGTC 58096 Query 139422 CGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACG 139481 || ||||||| ||| | | || || || || | |||||| || ||| Sbjct 58097 GGGGATCCACAGAGCCAGGAACAGGTCTCGGGCTCGAATCTCTTCCTTTCCGTGGTTCTT 58156 Query 139482 TTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGC 139541 | || | ||| || || | || ||||||| || || || || || || | || Sbjct 58157 TCGCAGCTCGCAGAACTCGAAGATATCGTCGTGCCAGGGCTCAAGGTACATTGCAAAGGC 58216 Query 139542 GCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAA 139598 || || ||| || || ||||| |||| ||| | | || || | || |||| Sbjct 58217 ACCAGGTCGCTTGTTGCCTCCCTGATCAACGTATCGGGCGGTGTTGTTATAGACACGCAG 58276 Query 139599 CATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG--GGA--CTGTTGCGAG 139654 ||| ||| | | |||| | | |||||||| || | | ||| ||| | || || Sbjct 58277 CATGGGCACGATACCGTTGGAGGTTCCGTTAGTTCCAGCAATGTAGGAGCCAGT----AG 58332 Query 139655 CTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAAT 139714 |||||| || || | | | ||||| |||||| || | ||||| || | | | || Sbjct 58333 CTCGGATGTTGTGGATAGACAGACCGATACCGCCGGCAGACTTGGAAATCAGAGCACAGG 58392 Query 139715 CGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATG 139774 | || ||||| || || ||| |||||||| ||| |||| || || || | Sbjct 58393 TTTTGAGGGTATCGTAGATGCCGTCGATGGAGTCGTCCTTCATGTTGACAAGGAAACACG 58452 Query 139775 ACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACA 139834 |||| | || || | || ||||| | ||||| || ||||| ||||| Sbjct 58453 ACGACATCTGAGGCTGGGGAGTTCCGGCGTTGTAGAGAGTGGGGGAAGCGTGAGTGAAGT 58512 Query 139835 TTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATAC 139894 | | ||||| | | ||| || || ||||| | |||| | |||||||||| Sbjct 58513 ACTTCTGAGACATATAGTTGTAGGTCTCAATGGCCCGGGCAATGTTGTCGCCGTGGATAC 58572 Query 139895 CGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttt 139954 |||||||||||||||| | ||| |||||| || ||||| || || || | || | Sbjct 58573 CGACAGAGACTCGCATGATCATCTGTTGGGGTCGCTCGGCAACAGCACCGTTGACTCGCA 58632 Query 139955 tCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 ||| || | ||| ||||||||| |||||||||| | ||| |||| || Sbjct 58633 GCAGGTATGCTCGCTCCAGGGTCTTGAAGCCAAAGTAGTTGTAGGTGAAGTC 58684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897436912120