Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq23 221 2e-51 seq29 143 4e-28 seq2 109 9e-18 >seq23 Length=2267247 Score = 221 bits (244), Expect = 2e-51 Identities = 250/332 (75%), Gaps = 5/332 (2%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || ||| | |||||| ||| |||||| |||||||| || ||||| Sbjct 1857504 ACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACCTCGCTT 1857445 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||||| |||| ||| ||||| ||||||||||||||||||||||| Sbjct 1857444 CTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGCGGCAAA 1857385 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | | | ||| ||||| |||| ||| | | || | | ||||||||| | ||||| Sbjct 1857384 GGCAATGAGTCGCTCTCCAAAGGTGGACT---CTTCGTCGGAGATCCACTTGAGGGCCCA 1857328 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTCT 794578 || ||||||||| | | |||| | || ||||||||| || |||| ||| | || Sbjct 1857327 GTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAGGTTCG-CT 1857269 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | |||||||||| ||| |||||||| || |||||||||||||| ||||||||||| | Sbjct 1857268 CTTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGTCTCGGAGTGGATGTTCT 1857209 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCAGTTG 794670 | || |||||||||||| || ||||| ||| Sbjct 1857208 CCATCATGATCTGGAAGCCGTAGAAGCACTTG 1857177 Score = 123 bits (136), Expect = 4e-22 Identities = 195/279 (70%), Gaps = 3/279 (1%) Strand=Plus/Minus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 || ||| |||||||||| | || ||||| ||| || | |||||||||| Sbjct 1857185 AAGCACTTGGCCTCGGGGGCCTGCACCTCGCCGGAGAATCGCTCAACCAGGTTCTCGTTA 1857126 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 ||||| |||||| ||| || || || ||||| ||||| ||| ||| ||||| ||| Sbjct 1857125 ACGATACCGTCGGAGGCAGCAAAGAATGCGAGAACGTGGGAGATGAAGAACCGCTCATCG 1857066 Query 796261 TCGCTGAGCGAGA---CCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTC 796317 | | |||| | |||||| || |||| || || || | |||||| || ||| Sbjct 1857065 TTGTTGAGTCTGTTCTCCCAGTCACCCATGTCCTTTCCAAGATCAATCTCCTCAGCTGTC 1857006 Query 796318 CAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAAC 796377 || || |||||||||||||| |||||||||| ||| || ||||| |||||||||| Sbjct 1857005 CAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCCAGATTTCGTGGTACTGGATGGGGAAG 1856946 Query 796378 AGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTCG 796416 || ||||| || ||||||| ||||| |||||| Sbjct 1856945 AGCACAAACCGTCGATGGTTCTCCTTGAGCAGAGGCTCG 1856907 Score = 95.1 bits (104), Expect = 2e-13 Identities = 176/253 (70%), Gaps = 8/253 (3%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||| ||| ||| ||||||||||||||||||||| | | Sbjct 1857826 TGACACCGGCCTTCTGGTAGTCGGACACTCGCTTCTCGAAAAAGTTGGTCTTGCCGGCCA 1857767 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCAC---C 794007 | ||||| |||||| | ||| ||||||| | || || | | || | | | Sbjct 1857766 GAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGG--AGTTA-TACACCTTGGAGTTAC 1857710 Query 794008 CGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGT 794067 |||| | | ||||| ||||| ||||| || || |||||||||||||| || ||||| Sbjct 1857709 CGAGAGCAACTAGCAGACGGTCAGCGACAAACTCGATGTACTGGCACATCAGCTTGGCGT 1857650 Query 794068 TCATGCCGATGAGCGCCAC-GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACG 794126 |||| || | || |||| |||||| | || | | ||||| | |||||| | || Sbjct 1857649 TCATACCAAGCAG-ACCACAGGGCAGAGCGTCAGTAAGGAACTCCTGCTCGATGCCAACA 1857591 Query 794127 GCCTCGATGATGA 794139 ||||||| |||| Sbjct 1857590 GCCTCGACAATGA 1857578 >seq29 Length=2752704 Score = 143 bits (158), Expect = 4e-28 Identities = 325/489 (66%), Gaps = 15/489 (3%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| || || || || || |||| |||| |||| || ||||||||||| | |||||||| Sbjct 58238 CTGATCAACGTATCGGGCGGTGTTGTTATAGACACGCAGCATGGGCACGATACCGTTGGA 58297 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||| || || || | ||||| ||| | || || | ||||| | | || Sbjct 58298 GGTTCCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCTCGGATGTTGTGGATAGACAGACC 58357 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| |||||||| | |||||| || || || || |||| || || ||||||||||| || Sbjct 58358 GATACCGCCGGCAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAGATGCCGTC 58417 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| |||||| ||||||||| | || || |||||||| | || || | | || || Sbjct 58418 GATGGAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGAGGCTGGGGAGTTCC 58477 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 ||| ||| |||| ||||| | || ||| | ||| || ||||| | |||||| Sbjct 58478 GGCGTTGTAGAGAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGACATATAGTTGTAGGT 58537 Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGAC 2073899 | | | || || | | || |||| || | | |||| | ||| Sbjct 58538 CTCAATGGCCCGGGCAA-----TGTT----GTCG------CCGTGGATACCGACAGAGAC 58582 Query 2073900 GCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAGGA 2073959 ||||||||||| | |||||||||||| | || || || || |||||| | Sbjct 58583 TCGCATGATCATCTGTTGGGGTCGCTCGGCAACAGCACCGTTGACTCGCAGCAGGTATGC 58642 Query 2073960 CCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATGGC 2074019 || ||||||| | ||||||||| ||||| | ||| || |||| | | ||||| Sbjct 58643 TCGCTCCAGGGTCTTGAAGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTAGAGAATGGC 58702 Query 2074020 GGCGTCGAG 2074028 | ||| ||| Sbjct 58703 GCCGTTGAG 58711 Score = 107 bits (118), Expect = 3e-17 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 1485504 GGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGT 1485563 ||||||| |||| || || ||| | | || || || || |||||||||||||| || | Sbjct 1927689 GGCGTGCTTGGCGAGCTCACCGGGGAGAATGAGTCGGACAGCGGTCTGGATCTCTCGAGA 1927630 Query 1485564 GCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTC 1485623 ||| ||| |||| | | ||||| | |||||||||| ||| || || Sbjct 1927629 AGTGATGGTGGACTTCTTGGTGTAGGTGGCCAGCTTGGAGGCCTCGGTGGCGACTCGCTC 1927570 Query 1485624 GATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTC 1485683 | |||||||||||||| ||||||||||| ||||| | | | ||||||| || ||| Sbjct 1927569 AAAGATGTCGTTGACAAAGGAGTTCATGATAGACATGGCTCGGGTGGAGATACCAGTGTC 1927510 Query 1485684 GGGGTGCACCTGCTTGAGCACCTTGTA 1485710 ||||| |||||| ||||||||||| Sbjct 1927509 AGGGTGGGTCTGCTTCAGCACCTTGTA 1927483 >seq2 Length=696565 Score = 109 bits (120), Expect = 9e-18 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688 || |||||| | || || |||| || ||||| |||||||||||||| || || |||| Sbjct 186264 CTGTTTGAGATTATTCTGACCGCAAATTACCTGGACATCAAGCCCCTGCTGGACGTGGGC 186323 Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748 |||||||| ||||||||| | |||||||||||| | |||||||| || || ||||| Sbjct 186324 TGCAAGACGGTGGCCAACATGATCAAGGGCAAGACCCCCGAGGAGATTCGACGAACCTTC 186383 Query 2035749 AACAT 2035753 ||||| Sbjct 186384 AACAT 186388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916243315137731