Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22]
29 sequences; 20,590,669 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq23 271 1e-66
seq29 145 1e-28
>seq23
Length=2267247
Score = 271 bits (300), Expect = 1e-66
Identities = 408/568 (72%), Gaps = 14/568 (2%)
Strand=Plus/Plus
Query 1455715 CGAGCCGCTGCTGCGCGATAACC--CGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAG 1455772
|||||| ||||| || |||| ||| || ||||| || |||||||||| |||||
Sbjct 1856907 CGAGCCTCTGCTCAAGGAGAACCATCGA--CGGTTTGTGCTCTTCCCCATCCAGTACCAC 1856964
Query 1455773 CGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGA 1455832
|| ||| | |||||| || |||||||||||||| || ||||| || |||||| | ||
Sbjct 1856965 GAAATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACAGCTGAGGAGATTGA 1857023
Query 1455833 CCTCGGCGCCGACACGGTCCACTGGGTGTCG---CTGAGCGACGACGAGCGCCATTTCAT 1455889
|| || |||| || |||||| | || | | |||| ||||| |||||
Sbjct 1857024 TCTTGGAAAGGACATGGGTGACTGGGAGAACAGACTCAACAACGATGAGCGGTTCTTCAT 1857083
Query 1455890 CAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCG 1455949
| ||||| ||||| || ||| || ||| ||| || ||||| ||||||||||| |
Sbjct 1857084 CTCCCACGTTCTCGCATTCTTT-GCTGCCTCCGACGGTATCGTTAACGAGAACCTGGTTG 1857142
Query 1455950 GCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCG 1456009
|| || ||||| || || ||||| | || ||||| |||||||||
Sbjct 1857143 AGCGATTCTCCGGCGAGGTGCAGGCCCCCGAGGCCAAGTGCTTCTACGGCTTCCAGATCA 1857202
Query 1456010 CCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACC 1456069
|| || ||||||||||| || ||||||||||| ||||||||||| ||| |||||||||
Sbjct 1857203 TGATGGAGAACATCCACTCCGAGACCTACTCGCTGCTGATCGACACATACATCAAGGACC 1857262
Query 1456070 CGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAG 1456128
| ||| | ||| |||| || ||||||||| || | || | | | |||||||
Sbjct 1857263 CCAAAGAG-CGAACCTACCTGTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAAAAG 1857321
Query 1456129 GCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCG 1456188
||||||||||| | ||||||||| | | || | || || ||||| ||||| |||
Sbjct 1857322 GCCGACTGGGCCCTCAAGTGGATCTCCGACGA-AGAGTCCAC-CTTTGGAGAGCGACTCA 1857379
Query 1456189 TCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGC 1456247
| | |||||||| ||||||||||||||| ||||| ||| |||| | ||||||| ||||
Sbjct 1857380 TTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTGGC 1857439
Query 1456248 TCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
|||||||||| || |||||||| || ||
Sbjct 1857440 TCAAGAAGCGAGGTCTCATGCCTGGCCT 1857467
>seq29
Length=2752704
Score = 145 bits (160), Expect = 1e-28
Identities = 207/289 (72%), Gaps = 2/289 (1%)
Strand=Plus/Minus
Query 259895 ATGTCGCAGCAGTTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953
||||| ||| ||| ||||| ||| || | ||||| |||| || ||||| || || |
Sbjct 58525 ATGTCTCAGAAGTACTTCAC-TCACGCTTCCCCCACTCTCTACAACGCCGGAACTCCCCA 58467
Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013
|| |||| |||||||| || || | ||||||||| ||| || ||||| ||||||||
Sbjct 58466 GCCTCAGATGTCGTCGTGTTTCCTTGTCAACATGAAGGACGACTCCATCGACGGCATCTA 58407
Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073
|| || ||||| || || || || |||||| | |||||||| |||||| | |
Sbjct 58406 CGATACCCTCAAAACCTGTGCTCTGATTTCCAAGTCTGCCGGCGGTATCGGTCTGTCTAT 58347
Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133
||||| | || || | ||| ||||| | || || || ||||| |||||||| |
Sbjct 58346 CCACAACATCCGAGCTACTGGCTCCTACATTGCTGGAACTAACGGAACCTCCAACGGTAT 58287
Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182
||||||||||| || || | |||| |||| || || ||||| || |||
Sbjct 58286 CGTGCCCATGCTGCGTGTCTATAACAACACCGCCCGATACGTTGATCAG 58238
Score = 96.9 bits (106), Expect = 5e-14
Identities = 159/228 (70%), Gaps = 6/228 (3%)
Strand=Plus/Plus
Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958
||||| || | |||||||||||||| |||||| ||||| || | | |||
Sbjct 1927468 TACTCTTCTTACATCTACAAGGTGCTGAAGCAGACCCACCCTGACACTGGT-----ATC- 1927521
Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018
|||| | ||||||| ||||||||||| |||||||||||||| | || || ||| |
Sbjct 1927522 TCCACCCGAGCCATGTCTATCATGAACTCCTTTGTCAACGACATCTTTGAGCGAGTCGCC 1927581
Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078
||||||||| ||||| || || |||| ||| ||| | || ||||||
Sbjct 1927582 ACCGAGGCCTCCAAGCTGGCCACCTACACCAAGAAGTCCACCATCACTTCTCGAGAGATC 1927641
Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCC 725126
|||||||| || || || || | | ||| || || |||| |||||||
Sbjct 1927642 CAGACCGCTGTCCGACTCATTCTCCCCGGTGAGCTCGCCAAGCACGCC 1927689
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177808402896698
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