Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq23 271 1e-66 seq29 145 1e-28 >seq23 Length=2267247 Score = 271 bits (300), Expect = 1e-66 Identities = 408/568 (72%), Gaps = 14/568 (2%) Strand=Plus/Plus Query 1455715 CGAGCCGCTGCTGCGCGATAACC--CGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAG 1455772 |||||| ||||| || |||| ||| || ||||| || |||||||||| ||||| Sbjct 1856907 CGAGCCTCTGCTCAAGGAGAACCATCGA--CGGTTTGTGCTCTTCCCCATCCAGTACCAC 1856964 Query 1455773 CGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGA 1455832 || ||| | |||||| || |||||||||||||| || ||||| || |||||| | || Sbjct 1856965 GAAATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACAGCTGAGGAGATTGA 1857023 Query 1455833 CCTCGGCGCCGACACGGTCCACTGGGTGTCG---CTGAGCGACGACGAGCGCCATTTCAT 1455889 || || |||| || |||||| | || | | |||| ||||| ||||| Sbjct 1857024 TCTTGGAAAGGACATGGGTGACTGGGAGAACAGACTCAACAACGATGAGCGGTTCTTCAT 1857083 Query 1455890 CAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCG 1455949 | ||||| ||||| || ||| || ||| ||| || ||||| ||||||||||| | Sbjct 1857084 CTCCCACGTTCTCGCATTCTTT-GCTGCCTCCGACGGTATCGTTAACGAGAACCTGGTTG 1857142 Query 1455950 GCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCG 1456009 || || ||||| || || ||||| | || ||||| ||||||||| Sbjct 1857143 AGCGATTCTCCGGCGAGGTGCAGGCCCCCGAGGCCAAGTGCTTCTACGGCTTCCAGATCA 1857202 Query 1456010 CCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACC 1456069 || || ||||||||||| || ||||||||||| ||||||||||| ||| ||||||||| Sbjct 1857203 TGATGGAGAACATCCACTCCGAGACCTACTCGCTGCTGATCGACACATACATCAAGGACC 1857262 Query 1456070 CGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAG 1456128 | ||| | ||| |||| || ||||||||| || | || | | | ||||||| Sbjct 1857263 CCAAAGAG-CGAACCTACCTGTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAAAAG 1857321 Query 1456129 GCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCG 1456188 ||||||||||| | ||||||||| | | || | || || ||||| ||||| ||| Sbjct 1857322 GCCGACTGGGCCCTCAAGTGGATCTCCGACGA-AGAGTCCAC-CTTTGGAGAGCGACTCA 1857379 Query 1456189 TCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGC 1456247 | | |||||||| ||||||||||||||| ||||| ||| |||| | ||||||| |||| Sbjct 1857380 TTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTGGC 1857439 Query 1456248 TCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||||| || |||||||| || || Sbjct 1857440 TCAAGAAGCGAGGTCTCATGCCTGGCCT 1857467 >seq29 Length=2752704 Score = 145 bits (160), Expect = 1e-28 Identities = 207/289 (72%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 259895 ATGTCGCAGCAGTTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 ||||| ||| ||| ||||| ||| || | ||||| |||| || ||||| || || | Sbjct 58525 ATGTCTCAGAAGTACTTCAC-TCACGCTTCCCCCACTCTCTACAACGCCGGAACTCCCCA 58467 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 || |||| |||||||| || || | ||||||||| ||| || ||||| |||||||| Sbjct 58466 GCCTCAGATGTCGTCGTGTTTCCTTGTCAACATGAAGGACGACTCCATCGACGGCATCTA 58407 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 || || ||||| || || || || |||||| | |||||||| |||||| | | Sbjct 58406 CGATACCCTCAAAACCTGTGCTCTGATTTCCAAGTCTGCCGGCGGTATCGGTCTGTCTAT 58347 Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 ||||| | || || | ||| ||||| | || || || ||||| |||||||| | Sbjct 58346 CCACAACATCCGAGCTACTGGCTCCTACATTGCTGGAACTAACGGAACCTCCAACGGTAT 58287 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 ||||||||||| || || | |||| |||| || || ||||| || ||| Sbjct 58286 CGTGCCCATGCTGCGTGTCTATAACAACACCGCCCGATACGTTGATCAG 58238 Score = 96.9 bits (106), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | |||||||||||||| |||||| ||||| || | | ||| Sbjct 1927468 TACTCTTCTTACATCTACAAGGTGCTGAAGCAGACCCACCCTGACACTGGT-----ATC- 1927521 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 |||| | ||||||| ||||||||||| |||||||||||||| | || || ||| | Sbjct 1927522 TCCACCCGAGCCATGTCTATCATGAACTCCTTTGTCAACGACATCTTTGAGCGAGTCGCC 1927581 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 ||||||||| ||||| || || |||| ||| ||| | || |||||| Sbjct 1927582 ACCGAGGCCTCCAAGCTGGCCACCTACACCAAGAAGTCCACCATCACTTCTCGAGAGATC 1927641 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCC 725126 |||||||| || || || || | | ||| || || |||| ||||||| Sbjct 1927642 CAGACCGCTGTCCGACTCATTCTCCCCGGTGAGCTCGCCAAGCACGCC 1927689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177808402896698