Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq23 125 9e-24 seq19 86.0 8e-12 >seq23 Length=2267247 Score = 125 bits (138), Expect = 9e-24 Identities = 344/522 (66%), Gaps = 20/522 (4%) Strand=Plus/Minus Query 122380 ACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAAT 122439 || |||||||| || ||||||||||| || | || ||||| ||||| ||||| || Sbjct 1857800 ACTCGCTTCTCGAAAAAGTTGGTCTTGCCGGCCAGAGAGATGTTCTCCATGAAGTCGAAG 1857741 Query 122440 GGATTCTTCGCGTTCCAAA--TGGGTGGCACCC----CAACTTGTTTGAGGAGACGATCC 122493 || || | | ||| | | | || | ||| ||||| || ||||| || Sbjct 1857740 GGGTTGGTGGAGTTATACACCTTGGAGTTACCGAGAGCAACT------AGCAGACGGTCA 1857687 Query 122494 GACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGG 122553 | ||| |||| ||||||| | ||||| || | ||||||||| | || ||| || Sbjct 1857686 GCGACAAACTCGATGTACTGGCACATCAGCTTGGCGTTCATACCAAGCAGACCACAGGGC 1857627 Query 122554 AGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATA 122613 || ||||| | |||| | | ||| || |||| ||||| | || | | | | | Sbjct 1857626 AGAGCGTCAGTAAGGAACTCCTGCTCGATGCCAACAGCCTCGACAATGACGTCCTCAACA 1857567 Query 122614 GTTTCGGTAGTGGGTCTATTACGCAAAGT-CTTGAAGAGCTCCACGGCAAACTCCTGGTG 122672 | | | | ||||| || | ||| || | ||| ||| |||||| || ||| Sbjct 1857566 ATCTTCTTTGAGGGTCGGTT-CTCAAGGTGCGAGAAAAGCAGGCAGGCAAAGTCAGTGTG 1857508 Query 122673 GAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCG 122732 |||||||| |||||||| || || || || |||||| || || ||||||||||| || Sbjct 1857507 CAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACCTCG 1857448 Query 122733 CTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGC 122792 |||||| | ||| | || | | ||| || |||||||||||||| ||||| || || Sbjct 1857447 CTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGCGGC 1857388 Query 122793 AAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC---AAACCATTTCATTGC 122849 ||| |||| || || || | |||| | |||| | | || | ||| || | || Sbjct 1857387 AAAGGCAATGAGTCGCTCTCCAAAGGTG---GACTCTTCGTCGGAGATCCACTTGAGGGC 1857331 Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 ||| | ||||| |||| || || || | || | |||||| Sbjct 1857330 CCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGC 1857289 >seq19 Length=1292317 Score = 86.0 bits (94), Expect = 8e-12 Identities = 202/296 (68%), Gaps = 12/296 (4%) Strand=Plus/Plus Query 182513 GATGAGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACC 182572 ||| |||||||||||||| |||||||||| ||| ||| ||||| ||||| ||| | || Sbjct 506715 GATCAGACCCTTGATGTGGGAACCATCATGATCCTGATCGGTCATGATCATCAGATGCCC 506774 Query 182573 ATAGCGAAGTTCAGAAACATCTTG-GTAGTCTTTTCCTTGT--TGAAGACCAAGGATCTT 182629 || || || || || || | ||||| || ||||| || ||||| | ||||| Sbjct 506775 GTATCGCAGGTC-CTTGCAGCTCGTGTAGTGCTT--CTTGTGCTGCAGACCGATGATCTC 506831 Query 182630 CTTGAGATCATTGAACTCCTGGT--TTGATGTAAGCTGTGCCACCGAAGCGTCCCGAACA 182687 ||||| | | | || ||| || || ||| | ||| || || || || || || Sbjct 506832 CTTGATAGCCTGGATCTCGGCGTTCTTCATG--ATCTGGTCCGTGGACGCCTCTCGCACG 506889 Query 182688 TTCTTACAT-TTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAG 182746 || ||| ||||| || || || || | || || | || ||||||| ||||| || Sbjct 506890 TT-GAGCATCTTACCACGCAGAGGAAAGGCGCCATATCGTTCTCGACCAATCACAGACAG 506948 Query 182747 ACCCGCAACCGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACACT 182802 || || ||| | ||| | || || || ||||| |||| |||||| || |||| Sbjct 506949 TCCAGCGTTCGCCATGGTCATGGCGGAGTCTCCCTCAGTGAGAATGAGCGTGCACT 507004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031772338400