Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22]
29 sequences; 20,590,669 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq29 280 2e-70
seq13 149 7e-31
seq23 98.7 1e-15
>seq29
Length=2752704
Score = 280 bits (310), Expect = 2e-70
Identities = 425/602 (71%), Gaps = 2/602 (0%)
Strand=Plus/Minus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| ||| | | ||||||||||| ||| || | || | | |||||| |||
Sbjct 58590 TCATGCGAGTCTCTGTCGGTATCCACGGCGACAACATTGCCCGGGCCATTGAGACCTACA 58531
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
||| ||| || |||||||| || ||||| | || || || | |||||| || ||
Sbjct 58530 ACTATATGTCTCAGAAGTACTTCACTCACGCTTCCCCCACTCTCTACAACGCCGGAACTC 58471
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
|| |||||||||||| || ||||| || |||||||| ||||| ||||||||||
Sbjct 58470 CCCAGCCTCAGATGTCGTCGTGTTTCCTTGTCAACATGAAGGACGACTCCATCGACGGCA 58411
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC- 53431
||||||| || ||||| ||||| | || ||||||| | || ||||||||| |
Sbjct 58410 TCTACGATACCCTCAAAACCTGTGCTCTGATTTCCAAGTCTGCCGGCGGTATCGGTCTGT 58351
Query 53432 CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491
| | | | ||| |||| || | ||| | || || || ||||| | || |
Sbjct 58350 CTATCCAC-AACATCCGAGCTACTGGCTCCTACATTGCTGGAACTAACGGAACCTCCAAC 58292
Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551
|| |||||||| ||||| || |||| |||||||| ||||| ||||| | ||||| ||
Sbjct 58291 GGTATCGTGCCCATGCTGCGTGTCTATAACAACACCGCCCGATACGTTGATCAGGGAGGC 58232
Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611
||||| || | || || || ||||| ||||| ||||||| ||| || | |||
Sbjct 58231 AACAAGCGACCTGGTGCCTTTGCAATGTACCTTGAGCCCTGGCACGACGATATCTTCGAG 58172
Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACA 53671
|| ||||||||| ||| || || | |||||||| || ||| ||||||||
Sbjct 58171 TTCTGCGAGCTGCGAAAGAACCACGGAAAGGAAGAGATTCGAGCCCGAGACCTGTTCCTG 58112
Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731
||||||||||| || ||||| |||||| | || ||| || ||| || ||| ||||
Sbjct 58111 GCTCTGTGGATCCCCGACCTGTTCATGGAGCGAGTCGAGCAGAACGCTGAATGGACCCTG 58052
Query 53732 ATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATG 53791
|||||||| |||||||||||||| || | | ||||| ||||| |||||||| || ||
Sbjct 58051 ATGTGCCCCAACGAGTGCCCCGGTCTTGACGACGTCTATGGTGATGAGTTTAAGCAGCTG 57992
Query 53792 TA 53793
||
Sbjct 57991 TA 57990
Score = 147 bits (162), Expect = 2e-30
Identities = 529/813 (65%), Gaps = 36/813 (4%)
Strand=Plus/Minus
Query 55136 CGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCC 55195
|| ||||| ||| |||||||| || ||||||||| | ||| |||||
Sbjct 57670 CGAAACCTCAACGCTATCATCGACCGAAACTACTACCCGGTCCCCGAGGCCAAGAAGTCT 57611
Query 55196 AACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATG 55255
||| | || ||||| ||||| || | ||||| ||||| ||||||||| |||||||
Sbjct 57610 AACATGCGACACCGACCCATTGCTCTGGGTGTCCAGGGTCTGGCCGACACCTTCATGGCT 57551
Query 55256 CTCGGATTGCCCTTCGACTCGGAACCTGCTCGAGAAATTAACCAGG-ACATCTTC-AGTC 55313
|| || | || || || || || || | |||| | | || | |||||| || |
Sbjct 57550 CTACGACTCCCATTTGAGTCCGAGGAGGC-CAAGAAGCTCAACATCCAGATCTTCGAGAC 57492
Query 55314 GCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTAT-GAGCGAGGGGACCTAC 55372
||||||| | ||| |||| | || | | ||||| | ||| || || |||||
Sbjct 57491 -CATCTACCACGGAGCTGTCGAAGCCTCTTACGAGATGGCTCTTGAG-GACGGTGCCTAC 57434
Query 55373 GAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGCAAG 55432
||||| |||| | || || || |||||| |||||||||||||| ||| |
Sbjct 57433 GAGACCTTCCAGGGCTCCCCTGCCTCCAAGGGTGACCTCCAGTTCGATCTCTGGAACG-- 57376
Query 55433 TCTGACCCCAT-------------GTTTGACAAGTTGAAG--CATGA-CATTCACTTGTG 55476
|||| || | || ||| | | ||| || || ||| | |
Sbjct 57375 --TGACTCCTTCCGAGCTGTGGGAGTGGGACGATCTCAAGGCCAAGATCATGAA---GAC 57321
Query 55477 GGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCAT 55536
|| | || ||||| ||| | || || || ||||| || || || || | ||||| |
Sbjct 57320 TGGTATGCGAAACTCGCTGTTGGTCGCTCCCATGCCCACTGCCTCCACTTCCCAGATTCT 57261
Query 55537 GGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGC 55596
|| ||| ||| |||||||| ||||| ||||||| ||| || || || ||
Sbjct 57260 TGGTTTCAATGAGTGCTTCGAGCCCTACACTTCCAACATTTACTCTCGACGAGTTCTTGC 57201
Query 55597 AGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTG 55656
||||| || || ||||| || ||||||||||| || | | |||
Sbjct 57200 TGGTGAATTCCAGATTGTCAACCCCTGGCTGCTCAAGGACCTGGTTGAGGTTGGCCTGTG 57141
Query 55657 GAACCCGCAGATCAAGA-CGGATATTGT-GCGGAACGGGGGGTCCGTCCAGAATCTGG-- 55712
|||| | || |||| | || ||||| || || | || ||||| ||||| |
Sbjct 57140 GAACGAGACCATGAAGAACCGA-ATTGTTGCTGA-CAACGGATCCGTGCAGAACATCCCC 57083
Query 55713 -AGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGT 55771
| ||||| | | ||||||| | ||| ||| |||||||||||| | |||||| |
Sbjct 57082 AACATTCCCCAGGAAATCAAGGACCTGTACAAGACCGTGTGGGAGATTTCTCAGAAGCGA 57023
Query 55772 CTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATC 55831
| ||||| ||| ||||| || | | ||| |||||||| ||||| || |||||
Sbjct 57022 ATCATTGAGATGGCCGCTGACCGATCCCCCTTCATTGACCAGTCTCAGTCCCTCAACATT 56963
Query 55832 TTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAG 55891
||| || | ||| | ||| |||| | | ||| |||||||| ||||| |||||||||
Sbjct 56962 CACATCAAGGACCCTACCATGGGCAAGCTCACCTCCATGCACTTCTACGGCTGGAAGAAG 56903
Query 55892 GGACTCAAGACGGGTATGTACTATCTGCGGACC 55924
|| |||||||| ||||||||||| ||||| |||
Sbjct 56902 GGTCTCAAGACAGGTATGTACTACCTGCGAACC 56870
>seq13
Length=841849
Score = 149 bits (164), Expect = 7e-31
Identities = 424/641 (66%), Gaps = 8/641 (1%)
Strand=Plus/Plus
Query 53332 CTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGA 53391
||| ||||||||||| ||| | ||||| ||||||||||||||||| ||||||||
Sbjct 421739 CTGTTTCCTGGTGGCCATGGCAGCAGACTCCATCGACGGCATCTACGACACGCTCAAAAC 421798
Query 53392 GTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGC 53451
||||||||| |||||||| | || |||||||| | || | ||| | | ||
Sbjct 421799 GTGTGCCCAAATCTCCAAAACCGCCGGAGGTATCGGCTTGCATATCCACAACATTAGAGC 421858
Query 53452 GAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCG 53511
|| || | | || | ||| | | || || |||||||| ||||||||| |
Sbjct 421859 CAAGGGAGCTCTCATTACTGGGTCTCAAGGAAGATCCTCCGGAATCGTTCCTATGCTCAG 421918
Query 53512 CGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGT 53570
|| ||||||||||| || |||||||| |||| || || || || | ||| | |||
Sbjct 421919 AGTGTTCAACAACACTGCTCGGTACGTGGACCAAGGAGGAAACAAACGTCCAGGAG-CGT 421977
Query 53571 TCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGA 53630
| || | || | ||||| ||||| || |||||| |||| || || | ||||| |
Sbjct 421978 TTGCAGTGTATTTGGAGCCCTGGCATGCAGACATTTTGGATTTCCTGAATCTGCGCAAAA 422037
Query 53631 ATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGAC 53689
| || |||| ||| || | || ||||||||| || ||| || | ||| | || |||
Sbjct 422038 ACCATGGTGCCGAGGAAAATCGAGCCCGTGACCTCTTCTAC-GCCTTATGGGTGCCTGAC 422096
Query 53690 CTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGC 53749
|| || |||| || || ||||| | ||| |||||| || | || || | || |
Sbjct 422097 CTGTTTATGCGCAAAGTCGAGAATGGCGAAAAGTGGTCTCTTTTCTGTCCCAGAAAGGCC 422156
Query 53750 CCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGT- 53808
|| || || | ||| | || ||||| || || | ||| | |||| |||
Sbjct 422157 CCAGGTCTGGCCGATGTTTGGGGAGAGGAATTCGACCGCAAGTACGAGGATTACG-AGTC 422215
Query 53809 TCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAG 53868
| |||| | ||||| | || | | || | ||| | | | || || || | |||
Sbjct 422216 TAAGGGACTTTACAACTCGCAGATTGACGCCCAGGAGCTGTTCAAGGCCATTCTGACGAG 422275
Query 53869 CCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGA-TTCGGTCAACGAGAAGAGCA 53927
|||| | || || ||| || | |||| || || || | || |||| ||| ||
Sbjct 422276 CCAGATTGAAACAGGAGGACCTTTCATGCTGTATAAAGACAGCTGT-AACGCGAAATCCA 422334
Query 53928 ACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATGT 53968
||||||||||| ||||| ||||||||| ||| || |||
Sbjct 422335 ACCAGAAGAACCTCGGCACAATCAAATCGTCCAATTTGTGT 422375
>seq23
Length=2267247
Score = 98.7 bits (108), Expect = 1e-15
Identities = 354/546 (65%), Gaps = 12/546 (2%)
Strand=Plus/Minus
Query 74730 AGGTGAGAGTAAAGC-GTCACGGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAA 74788
||||| ||| ||||| | || |||||| || ||| || || |||| | || |
Sbjct 1857542 AGGTGCGAGAAAAGCAGGCA-GGCAAAGTCAGTGTGCAGACCCTCGTCTCGGGAGATGAG 1857484
Query 74789 TTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACA 74848
|| || || || | ||||||||||| || || |||||||| | ||| |||||||
Sbjct 1857483 CTCGTTGGAGAAGGTGAGGCCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGC 1857424
Query 74849 GAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908
||| || || |||||||||||| ||||| |||||||| | || || | | | ||
Sbjct 1857423 GAAAGAGCCGGAGAAGAAGATGCCCTCGACGGCGGCAAAGGCAATGAGTCGCT-CTCCAA 1857365
Query 74909 CGGTG----CATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA- 74963
|||| | ||| | ||||| | | ||||| || || ||| |||| |||
Sbjct 1857364 AGGTGGACTCTTCGTCGGAGATCCACTTGAGGGCCCAGTCGGCCTTTTTCTTGA-TGCAG 1857306
Query 74964 GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTG 75023
|||| || ||||| || | ||| ||| | ||||| ||| ||||||| | ||
Sbjct 1857305 GGGATGGTCTCGATGGCGTTGAACAGGTAGGTTCGCTCTTTGGGGTCCTTGATGTATGTG 1857246
Query 75024 TCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAG 75083
|| |||| || ||||| ||||| || || || ||| | | |||| | |||||
Sbjct 1857245 TCGATCAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAG 1857186
Query 75084 AAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATG 75143
|| || ||||| | ||| || || || || | | | ||||| |
Sbjct 1857185 AAGCACTTGGCCTCGGGGGCCTGCACCTCGCCGGAGAATCGCTCAACCAGGTTCTCGTTA 1857126
Query 75144 ACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203
||||| ||||| ||||| || || || || || || ||| ||| |||||||||
Sbjct 1857125 ACGATACCGTCGGAGGCAGCAAAGAATGCGAGAACGTGGGAGATGAAGAACCGCTCATCG 1857066
Query 75204 TCAGTGAGT---TTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTC 75260
| ||||| || ||||| || || |||| | | |||||||||||| | |||
Sbjct 1857065 TTGTTGAGTCTGTTCTCCCAGTCACCCATGTCCTTTCCAAGATCAATCTCCTCAGCTGTC 1857006
Query 75261 CAGAAA 75266
||||||
Sbjct 1857005 CAGAAA 1857000
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215801634200
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