Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq29 280 2e-70 seq13 149 7e-31 seq23 98.7 1e-15 >seq29 Length=2752704 Score = 280 bits (310), Expect = 2e-70 Identities = 425/602 (71%), Gaps = 2/602 (0%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| ||| | | ||||||||||| ||| || | || | | |||||| ||| Sbjct 58590 TCATGCGAGTCTCTGTCGGTATCCACGGCGACAACATTGCCCGGGCCATTGAGACCTACA 58531 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 ||| ||| || |||||||| || ||||| | || || || | |||||| || || Sbjct 58530 ACTATATGTCTCAGAAGTACTTCACTCACGCTTCCCCCACTCTCTACAACGCCGGAACTC 58471 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || |||||||||||| || ||||| || |||||||| ||||| |||||||||| Sbjct 58470 CCCAGCCTCAGATGTCGTCGTGTTTCCTTGTCAACATGAAGGACGACTCCATCGACGGCA 58411 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC- 53431 ||||||| || ||||| ||||| | || ||||||| | || ||||||||| | Sbjct 58410 TCTACGATACCCTCAAAACCTGTGCTCTGATTTCCAAGTCTGCCGGCGGTATCGGTCTGT 58351 Query 53432 CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491 | | | | ||| |||| || | ||| | || || || ||||| | || | Sbjct 58350 CTATCCAC-AACATCCGAGCTACTGGCTCCTACATTGCTGGAACTAACGGAACCTCCAAC 58292 Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 || |||||||| ||||| || |||| |||||||| ||||| ||||| | ||||| || Sbjct 58291 GGTATCGTGCCCATGCTGCGTGTCTATAACAACACCGCCCGATACGTTGATCAGGGAGGC 58232 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 ||||| || | || || || ||||| ||||| ||||||| ||| || | ||| Sbjct 58231 AACAAGCGACCTGGTGCCTTTGCAATGTACCTTGAGCCCTGGCACGACGATATCTTCGAG 58172 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACA 53671 || ||||||||| ||| || || | |||||||| || ||| |||||||| Sbjct 58171 TTCTGCGAGCTGCGAAAGAACCACGGAAAGGAAGAGATTCGAGCCCGAGACCTGTTCCTG 58112 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731 ||||||||||| || ||||| |||||| | || ||| || ||| || ||| |||| Sbjct 58111 GCTCTGTGGATCCCCGACCTGTTCATGGAGCGAGTCGAGCAGAACGCTGAATGGACCCTG 58052 Query 53732 ATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATG 53791 |||||||| |||||||||||||| || | | ||||| ||||| |||||||| || || Sbjct 58051 ATGTGCCCCAACGAGTGCCCCGGTCTTGACGACGTCTATGGTGATGAGTTTAAGCAGCTG 57992 Query 53792 TA 53793 || Sbjct 57991 TA 57990 Score = 147 bits (162), Expect = 2e-30 Identities = 529/813 (65%), Gaps = 36/813 (4%) Strand=Plus/Minus Query 55136 CGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCC 55195 || ||||| ||| |||||||| || ||||||||| | ||| ||||| Sbjct 57670 CGAAACCTCAACGCTATCATCGACCGAAACTACTACCCGGTCCCCGAGGCCAAGAAGTCT 57611 Query 55196 AACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATG 55255 ||| | || ||||| ||||| || | ||||| ||||| ||||||||| ||||||| Sbjct 57610 AACATGCGACACCGACCCATTGCTCTGGGTGTCCAGGGTCTGGCCGACACCTTCATGGCT 57551 Query 55256 CTCGGATTGCCCTTCGACTCGGAACCTGCTCGAGAAATTAACCAGG-ACATCTTC-AGTC 55313 || || | || || || || || || | |||| | | || | |||||| || | Sbjct 57550 CTACGACTCCCATTTGAGTCCGAGGAGGC-CAAGAAGCTCAACATCCAGATCTTCGAGAC 57492 Query 55314 GCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTAT-GAGCGAGGGGACCTAC 55372 ||||||| | ||| |||| | || | | ||||| | ||| || || ||||| Sbjct 57491 -CATCTACCACGGAGCTGTCGAAGCCTCTTACGAGATGGCTCTTGAG-GACGGTGCCTAC 57434 Query 55373 GAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGCAAG 55432 ||||| |||| | || || || |||||| |||||||||||||| ||| | Sbjct 57433 GAGACCTTCCAGGGCTCCCCTGCCTCCAAGGGTGACCTCCAGTTCGATCTCTGGAACG-- 57376 Query 55433 TCTGACCCCAT-------------GTTTGACAAGTTGAAG--CATGA-CATTCACTTGTG 55476 |||| || | || ||| | | ||| || || ||| | | Sbjct 57375 --TGACTCCTTCCGAGCTGTGGGAGTGGGACGATCTCAAGGCCAAGATCATGAA---GAC 57321 Query 55477 GGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCAT 55536 || | || ||||| ||| | || || || ||||| || || || || | ||||| | Sbjct 57320 TGGTATGCGAAACTCGCTGTTGGTCGCTCCCATGCCCACTGCCTCCACTTCCCAGATTCT 57261 Query 55537 GGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGC 55596 || ||| ||| |||||||| ||||| ||||||| ||| || || || || Sbjct 57260 TGGTTTCAATGAGTGCTTCGAGCCCTACACTTCCAACATTTACTCTCGACGAGTTCTTGC 57201 Query 55597 AGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTG 55656 ||||| || || ||||| || ||||||||||| || | | ||| Sbjct 57200 TGGTGAATTCCAGATTGTCAACCCCTGGCTGCTCAAGGACCTGGTTGAGGTTGGCCTGTG 57141 Query 55657 GAACCCGCAGATCAAGA-CGGATATTGT-GCGGAACGGGGGGTCCGTCCAGAATCTGG-- 55712 |||| | || |||| | || ||||| || || | || ||||| ||||| | Sbjct 57140 GAACGAGACCATGAAGAACCGA-ATTGTTGCTGA-CAACGGATCCGTGCAGAACATCCCC 57083 Query 55713 -AGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGT 55771 | ||||| | | ||||||| | ||| ||| |||||||||||| | |||||| | Sbjct 57082 AACATTCCCCAGGAAATCAAGGACCTGTACAAGACCGTGTGGGAGATTTCTCAGAAGCGA 57023 Query 55772 CTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATC 55831 | ||||| ||| ||||| || | | ||| |||||||| ||||| || ||||| Sbjct 57022 ATCATTGAGATGGCCGCTGACCGATCCCCCTTCATTGACCAGTCTCAGTCCCTCAACATT 56963 Query 55832 TTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAG 55891 ||| || | ||| | ||| |||| | | ||| |||||||| ||||| ||||||||| Sbjct 56962 CACATCAAGGACCCTACCATGGGCAAGCTCACCTCCATGCACTTCTACGGCTGGAAGAAG 56903 Query 55892 GGACTCAAGACGGGTATGTACTATCTGCGGACC 55924 || |||||||| ||||||||||| ||||| ||| Sbjct 56902 GGTCTCAAGACAGGTATGTACTACCTGCGAACC 56870 >seq13 Length=841849 Score = 149 bits (164), Expect = 7e-31 Identities = 424/641 (66%), Gaps = 8/641 (1%) Strand=Plus/Plus Query 53332 CTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGA 53391 ||| ||||||||||| ||| | ||||| ||||||||||||||||| |||||||| Sbjct 421739 CTGTTTCCTGGTGGCCATGGCAGCAGACTCCATCGACGGCATCTACGACACGCTCAAAAC 421798 Query 53392 GTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGC 53451 ||||||||| |||||||| | || |||||||| | || | ||| | | || Sbjct 421799 GTGTGCCCAAATCTCCAAAACCGCCGGAGGTATCGGCTTGCATATCCACAACATTAGAGC 421858 Query 53452 GAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCG 53511 || || | | || | ||| | | || || |||||||| ||||||||| | Sbjct 421859 CAAGGGAGCTCTCATTACTGGGTCTCAAGGAAGATCCTCCGGAATCGTTCCTATGCTCAG 421918 Query 53512 CGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGT 53570 || ||||||||||| || |||||||| |||| || || || || | ||| | ||| Sbjct 421919 AGTGTTCAACAACACTGCTCGGTACGTGGACCAAGGAGGAAACAAACGTCCAGGAG-CGT 421977 Query 53571 TCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGA 53630 | || | || | ||||| ||||| || |||||| |||| || || | ||||| | Sbjct 421978 TTGCAGTGTATTTGGAGCCCTGGCATGCAGACATTTTGGATTTCCTGAATCTGCGCAAAA 422037 Query 53631 ATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGAC 53689 | || |||| ||| || | || ||||||||| || ||| || | ||| | || ||| Sbjct 422038 ACCATGGTGCCGAGGAAAATCGAGCCCGTGACCTCTTCTAC-GCCTTATGGGTGCCTGAC 422096 Query 53690 CTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGC 53749 || || |||| || || ||||| | ||| |||||| || | || || | || | Sbjct 422097 CTGTTTATGCGCAAAGTCGAGAATGGCGAAAAGTGGTCTCTTTTCTGTCCCAGAAAGGCC 422156 Query 53750 CCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGT- 53808 || || || | ||| | || ||||| || || | ||| | |||| ||| Sbjct 422157 CCAGGTCTGGCCGATGTTTGGGGAGAGGAATTCGACCGCAAGTACGAGGATTACG-AGTC 422215 Query 53809 TCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAG 53868 | |||| | ||||| | || | | || | ||| | | | || || || | ||| Sbjct 422216 TAAGGGACTTTACAACTCGCAGATTGACGCCCAGGAGCTGTTCAAGGCCATTCTGACGAG 422275 Query 53869 CCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGA-TTCGGTCAACGAGAAGAGCA 53927 |||| | || || ||| || | |||| || || || | || |||| ||| || Sbjct 422276 CCAGATTGAAACAGGAGGACCTTTCATGCTGTATAAAGACAGCTGT-AACGCGAAATCCA 422334 Query 53928 ACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATGT 53968 ||||||||||| ||||| ||||||||| ||| || ||| Sbjct 422335 ACCAGAAGAACCTCGGCACAATCAAATCGTCCAATTTGTGT 422375 >seq23 Length=2267247 Score = 98.7 bits (108), Expect = 1e-15 Identities = 354/546 (65%), Gaps = 12/546 (2%) Strand=Plus/Minus Query 74730 AGGTGAGAGTAAAGC-GTCACGGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAA 74788 ||||| ||| ||||| | || |||||| || ||| || || |||| | || | Sbjct 1857542 AGGTGCGAGAAAAGCAGGCA-GGCAAAGTCAGTGTGCAGACCCTCGTCTCGGGAGATGAG 1857484 Query 74789 TTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACA 74848 || || || || | ||||||||||| || || |||||||| | ||| ||||||| Sbjct 1857483 CTCGTTGGAGAAGGTGAGGCCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGC 1857424 Query 74849 GAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 ||| || || |||||||||||| ||||| |||||||| | || || | | | || Sbjct 1857423 GAAAGAGCCGGAGAAGAAGATGCCCTCGACGGCGGCAAAGGCAATGAGTCGCT-CTCCAA 1857365 Query 74909 CGGTG----CATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA- 74963 |||| | ||| | ||||| | | ||||| || || ||| |||| ||| Sbjct 1857364 AGGTGGACTCTTCGTCGGAGATCCACTTGAGGGCCCAGTCGGCCTTTTTCTTGA-TGCAG 1857306 Query 74964 GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTG 75023 |||| || ||||| || | ||| ||| | ||||| ||| ||||||| | || Sbjct 1857305 GGGATGGTCTCGATGGCGTTGAACAGGTAGGTTCGCTCTTTGGGGTCCTTGATGTATGTG 1857246 Query 75024 TCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAG 75083 || |||| || ||||| ||||| || || || ||| | | |||| | ||||| Sbjct 1857245 TCGATCAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAG 1857186 Query 75084 AAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATG 75143 || || ||||| | ||| || || || || | | | ||||| | Sbjct 1857185 AAGCACTTGGCCTCGGGGGCCTGCACCTCGCCGGAGAATCGCTCAACCAGGTTCTCGTTA 1857126 Query 75144 ACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203 ||||| ||||| ||||| || || || || || || ||| ||| ||||||||| Sbjct 1857125 ACGATACCGTCGGAGGCAGCAAAGAATGCGAGAACGTGGGAGATGAAGAACCGCTCATCG 1857066 Query 75204 TCAGTGAGT---TTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTC 75260 | ||||| || ||||| || || |||| | | |||||||||||| | ||| Sbjct 1857065 TTGTTGAGTCTGTTCTCCCAGTCACCCATGTCCTTTCCAAGATCAATCTCCTCAGCTGTC 1857006 Query 75261 CAGAAA 75266 |||||| Sbjct 1857005 CAGAAA 1857000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215801634200