Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq29 217 2e-51 seq14 190 2e-43 seq20 111 2e-19 >seq29 Length=2752704 Score = 217 bits (240), Expect = 2e-51 Identities = 689/1059 (65%), Gaps = 33/1059 (3%) Strand=Plus/Plus Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774 |||||| ||| ||||| ||||| || || | || || || ||||| ||| |||| || Sbjct 57554 CATGAAGGTGTCGGCCAGACCCTGGACACCCAGAGCAATGGGTCGGTGTCGCATGTTAGA 57613 Query 80775 TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT 80834 || |||||| || | ||||| |||| ||||||| ||| ||||| || Sbjct 57614 CTTCTTGGCCTCGGGGACCGGGTAGTAGTTTCGGTCGATGATAGCGTTGAGGTTTCGCAC 57673 Query 80835 AACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA-------TTGGT-TCCCCT-- 80884 || ||| | || || || || |||| |||||| | ||||| || || Sbjct 57674 AATGACCTTGGCAATGTCGTGCAGCTTCTTGAAGTCGTAGAACGAGTTGGTGTCGTCTCG 57733 Query 80885 --TCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATC 80942 | ||||| | || || | ||| ||||| ||||| || || ||||| |||| | Sbjct 57734 AGTAACAAAAGTGGGCAGAGCGATGGAAGCCAGGTTGCAGACAGCGACCTCATCAGGAGA 57793 Query 80943 TGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTG 81002 | |||| || || || ||||| ||||||||||||||||| || ||||| ||||| Sbjct 57794 AGAGTACTCTACAATCTCACAGCACAGGTTAGAAGACTTAATTGTTCCGAGGTTCTTCTG 57853 Query 81003 GTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTG 81062 ||| ||||| |||||| | ||||||||| |||| | ||| | |||| |||| ||| Sbjct 57854 GTTGGACTTTCGGTTGCAGGAGTCCTTGTACAGCATGAAGGGGTTGCCGGACTCGGTCTG 57913 Query 81063 TGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTC 81122 | | ||| ||| || ||| | || | || || ||| | ||| || Sbjct 57914 GCAGTCGAGAATGTGGTACCACAGCTTCTGGGCAGGGATGGTTCGTCGGCCTCGGCCCTC 57973 Query 81123 GGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGT-GAAGT--TCAGTGAGGT 81178 | | |||| |||| |||| | | |||| |||| | || || ||| || Sbjct 57974 CTTCTCGTACTGCTCGTACAGCTGCTTA-AACTCATCACCATAGACGTCGTCA---AGAC 58029 Query 81179 CTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGA 81238 | ||||||||||| |||||||||||| ||| || | || | ||| || || ||||| Sbjct 58030 CGGGGCACTCGTTGGGGCACATCAGGGTCCATTCAGCGTTCTGCTCGACTCGCTCCATGA 58089 Query 81239 AAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCT 81298 | ||| |||||||| || || ||||||||| ||| || ||| || | || | Sbjct 58090 ACAGGTCGGGGATCCACAGAGCCAGGAACAGGTCTCGGGCTCGAATCTCTTCCTTTCCGT 58149 Query 81299 GGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGG 81358 |||| |||| |||| || || | ||| || | ||||| ||||| || |||| | Sbjct 58150 GGTTCTTTCGCAGCTCGCAGAACTCGAAGATATCGTCGTGCCAGGGCTCAAGGTACATTG 58209 Query 81359 CGATCGACCC------CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAA 81412 | | | || |||| ||| ||||| | ||||| ||||| || |||| Sbjct 58210 CAAAGGCACCAGGTCGCTTGTT---GCCTCCCTGATCAACGTATCGGGCGGTGTTGTTAT 58266 Query 81413 ATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACC 81472 | ||||||| ||| || | |||||| | || ||||| || || | || || | Sbjct 58267 AGACACGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTAGTTCCAGCAATGTAGGAGC 58326 Query 81473 CCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAG 81532 | | || || | ||| ||| || |||||||| || || | |||| |||||| ||| Sbjct 58327 CAGTAGCTCGGATGTTGTGGATAGACAGACCGATACCGCCGGCAGACTTGGAAATCAGAG 58386 Query 81533 CACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGA 81592 |||| || | ||| || || || || |||||| || | ||||||| | | || Sbjct 58387 CACAGGTTTTGAGGGTATCGTAGATGCCGTCGATGGAGTCGTCCTTCATGTTGACAAGGA 58446 Query 81593 AACAGCTTGACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTG 81650 |||| ||||||||||| | ||| ||||| ||| | || || |||| ||||| Sbjct 58447 AACACGACGACATCTGAGG--CTGGGGAGTTCCGGCGTTGTAGAGAGTGGGGGAAGCGTG 58504 Query 81651 AATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACC 81710 | |||| || | ||||| || ||||| || || | || | ||| | ||| || Sbjct 58505 AGTGAAGTACTTCTGAGACATATAGTTGTAGGTCTCAATGGCCCGGGCAATGTTGTCGCC 58564 Query 81711 GTGAATACCGATAGCTACACGCATAAACATGTACTGGGG 81749 ||| ||||||| || || ||||| | ||| | ||||| Sbjct 58565 GTGGATACCGACAGAGACTCGCATGATCATCTGTTGGGG 58603 Score = 111 bits (122), Expect = 2e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || ||||| |||||||| || |||||||| ||||||||||||||||| | |||||| || Sbjct 56871 GTTCGCAGGTAGTACATACCTGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATGGAG 56930 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||||||| | | || |||| || ||| ||||| || ||||||||||| ||| Sbjct 56931 GTGAGCTTGCCCATGGTAGGGTCCTTGATGTGAATGTTGAGGGACTGAGACTGGTCAATG 56990 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 || | || || || ||||| ||||| ||| ||| || | ||| ||||| || || Sbjct 56991 AAGGGGGATCGGTCAGCGGCCATCTCAATGATTCGCTTCTGAGAAATCTCCCACACGGT 57049 >seq14 Length=2997610 Score = 190 bits (210), Expect = 2e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||||||||| |||||||| |||||||| || || ||||| ||||| Sbjct 1826840 AATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTCGAGGTGGAGTCTTC 1826781 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || | ||| | || || |||||||||||||||||||| || ||||| Sbjct 1826780 CGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCA 1826721 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || || || || |||||||| |||||||| | || ||||| | ||||| || Sbjct 1826720 GCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAA 1826661 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| ||||| ||| |||| ||||| ||||| Sbjct 1826660 CATCCAGAAGGAGTCCACTCTCCATCTCGTCCTGCGACTTCGAGGTGG 1826613 Score = 183 bits (202), Expect = 3e-41 Identities = 176/226 (78%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466 ||||||||||||||||||| ||||| ||||||||||| || || ||||| ||||| || Sbjct 1945401 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTG 1945342 Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526 | | ||||| || | ||| | || || ||||||||||||||||| || || ||||||| Sbjct 1945341 ACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAGC 1945282 Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATG 27586 |||| || || || || |||||||| |||||||| | || || || | ||||| || Sbjct 1945281 AGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACTCTTTCCGACTACAACA 1945222 Query 27587 TCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| ||||| || |||| || || || || Sbjct 1945221 TCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGAGGAGG 1945176 >seq20 Length=352371 Score = 111 bits (122), Expect = 2e-19 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||| | || |||||||||||||||||||||||||| ||||||||||| || ||||| ||| Sbjct 352280 AAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCGGACCAGCAGCGACTGATTTTCGCT 352339 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCT 27572 |||||||| |||||||||| ||| || || Sbjct 352340 GGTAAGCAGCTCGAGGATGGTCGAACTCT 352368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310193262480