Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22]
29 sequences; 20,590,669 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq29 217 2e-51
seq14 190 2e-43
seq20 111 2e-19
>seq29
Length=2752704
Score = 217 bits (240), Expect = 2e-51
Identities = 689/1059 (65%), Gaps = 33/1059 (3%)
Strand=Plus/Plus
Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774
|||||| ||| ||||| ||||| || || | || || || ||||| ||| |||| ||
Sbjct 57554 CATGAAGGTGTCGGCCAGACCCTGGACACCCAGAGCAATGGGTCGGTGTCGCATGTTAGA 57613
Query 80775 TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT 80834
|| |||||| || | ||||| |||| ||||||| ||| ||||| ||
Sbjct 57614 CTTCTTGGCCTCGGGGACCGGGTAGTAGTTTCGGTCGATGATAGCGTTGAGGTTTCGCAC 57673
Query 80835 AACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA-------TTGGT-TCCCCT-- 80884
|| ||| | || || || || |||| |||||| | ||||| || ||
Sbjct 57674 AATGACCTTGGCAATGTCGTGCAGCTTCTTGAAGTCGTAGAACGAGTTGGTGTCGTCTCG 57733
Query 80885 --TCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATC 80942
| ||||| | || || | ||| ||||| ||||| || || ||||| |||| |
Sbjct 57734 AGTAACAAAAGTGGGCAGAGCGATGGAAGCCAGGTTGCAGACAGCGACCTCATCAGGAGA 57793
Query 80943 TGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTG 81002
| |||| || || || ||||| ||||||||||||||||| || ||||| |||||
Sbjct 57794 AGAGTACTCTACAATCTCACAGCACAGGTTAGAAGACTTAATTGTTCCGAGGTTCTTCTG 57853
Query 81003 GTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTG 81062
||| ||||| |||||| | ||||||||| |||| | ||| | |||| |||| |||
Sbjct 57854 GTTGGACTTTCGGTTGCAGGAGTCCTTGTACAGCATGAAGGGGTTGCCGGACTCGGTCTG 57913
Query 81063 TGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTC 81122
| | ||| ||| || ||| | || | || || ||| | ||| ||
Sbjct 57914 GCAGTCGAGAATGTGGTACCACAGCTTCTGGGCAGGGATGGTTCGTCGGCCTCGGCCCTC 57973
Query 81123 GGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGT-GAAGT--TCAGTGAGGT 81178
| | |||| |||| |||| | | |||| |||| | || || ||| ||
Sbjct 57974 CTTCTCGTACTGCTCGTACAGCTGCTTA-AACTCATCACCATAGACGTCGTCA---AGAC 58029
Query 81179 CTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGA 81238
| ||||||||||| |||||||||||| ||| || | || | ||| || || |||||
Sbjct 58030 CGGGGCACTCGTTGGGGCACATCAGGGTCCATTCAGCGTTCTGCTCGACTCGCTCCATGA 58089
Query 81239 AAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCT 81298
| ||| |||||||| || || ||||||||| ||| || ||| || | || |
Sbjct 58090 ACAGGTCGGGGATCCACAGAGCCAGGAACAGGTCTCGGGCTCGAATCTCTTCCTTTCCGT 58149
Query 81299 GGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGG 81358
|||| |||| |||| || || | ||| || | ||||| ||||| || |||| |
Sbjct 58150 GGTTCTTTCGCAGCTCGCAGAACTCGAAGATATCGTCGTGCCAGGGCTCAAGGTACATTG 58209
Query 81359 CGATCGACCC------CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAA 81412
| | | || |||| ||| ||||| | ||||| ||||| || ||||
Sbjct 58210 CAAAGGCACCAGGTCGCTTGTT---GCCTCCCTGATCAACGTATCGGGCGGTGTTGTTAT 58266
Query 81413 ATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACC 81472
| ||||||| ||| || | |||||| | || ||||| || || | || || |
Sbjct 58267 AGACACGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTAGTTCCAGCAATGTAGGAGC 58326
Query 81473 CCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAG 81532
| | || || | ||| ||| || |||||||| || || | |||| |||||| |||
Sbjct 58327 CAGTAGCTCGGATGTTGTGGATAGACAGACCGATACCGCCGGCAGACTTGGAAATCAGAG 58386
Query 81533 CACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGA 81592
|||| || | ||| || || || || |||||| || | ||||||| | | ||
Sbjct 58387 CACAGGTTTTGAGGGTATCGTAGATGCCGTCGATGGAGTCGTCCTTCATGTTGACAAGGA 58446
Query 81593 AACAGCTTGACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTG 81650
|||| ||||||||||| | ||| ||||| ||| | || || |||| |||||
Sbjct 58447 AACACGACGACATCTGAGG--CTGGGGAGTTCCGGCGTTGTAGAGAGTGGGGGAAGCGTG 58504
Query 81651 AATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACC 81710
| |||| || | ||||| || ||||| || || | || | ||| | ||| ||
Sbjct 58505 AGTGAAGTACTTCTGAGACATATAGTTGTAGGTCTCAATGGCCCGGGCAATGTTGTCGCC 58564
Query 81711 GTGAATACCGATAGCTACACGCATAAACATGTACTGGGG 81749
||| ||||||| || || ||||| | ||| | |||||
Sbjct 58565 GTGGATACCGACAGAGACTCGCATGATCATCTGTTGGGG 58603
Score = 111 bits (122), Expect = 2e-19
Identities = 132/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097
|| ||||| |||||||| || |||||||| ||||||||||||||||| | |||||| ||
Sbjct 56871 GTTCGCAGGTAGTACATACCTGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATGGAG 56930
Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157
||||||| | | || |||| || ||| ||||| || ||||||||||| |||
Sbjct 56931 GTGAGCTTGCCCATGGTAGGGTCCTTGATGTGAATGTTGAGGGACTGAGACTGGTCAATG 56990
Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216
|| | || || || ||||| ||||| ||| ||| || | ||| ||||| || ||
Sbjct 56991 AAGGGGGATCGGTCAGCGGCCATCTCAATGATTCGCTTCTGAGAAATCTCCCACACGGT 57049
>seq14
Length=2997610
Score = 190 bits (210), Expect = 2e-43
Identities = 179/228 (79%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || ||||||||||| |||||||| |||||||| || || ||||| |||||
Sbjct 1826840 AATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTCGAGGTGGAGTCTTC 1826781
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | ||| | || | ||| | || || |||||||||||||||||||| || |||||
Sbjct 1826780 CGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCA 1826721
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||||| || || || || |||||||| |||||||| | || ||||| | ||||| ||
Sbjct 1826720 GCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAA 1826661
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| |||||||| ||||| ||| |||| ||||| |||||
Sbjct 1826660 CATCCAGAAGGAGTCCACTCTCCATCTCGTCCTGCGACTTCGAGGTGG 1826613
Score = 183 bits (202), Expect = 3e-41
Identities = 176/226 (78%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466
||||||||||||||||||| ||||| ||||||||||| || || ||||| ||||| ||
Sbjct 1945401 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTG 1945342
Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526
| | ||||| || | ||| | || || ||||||||||||||||| || || |||||||
Sbjct 1945341 ACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAGC 1945282
Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATG 27586
|||| || || || || |||||||| |||||||| | || || || | ||||| ||
Sbjct 1945281 AGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACTCTTTCCGACTACAACA 1945222
Query 27587 TCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| |||||||| ||||| || |||| || || || ||
Sbjct 1945221 TCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGAGGAGG 1945176
>seq20
Length=352371
Score = 111 bits (122), Expect = 2e-19
Identities = 78/89 (88%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||| | || |||||||||||||||||||||||||| ||||||||||| || ||||| |||
Sbjct 352280 AAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCGGACCAGCAGCGACTGATTTTCGCT 352339
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCT 27572
|||||||| |||||||||| ||| || ||
Sbjct 352340 GGTAAGCAGCTCGAGGATGGTCGAACTCT 352368
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570310193262480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |