Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq14 190 5e-43 seq20 95.1 3e-14 >seq14 Length=2997610 Score = 190 bits (210), Expect = 5e-43 Identities = 176/223 (79%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| ||||| || || ||||||||||| || |||||||| || || | |||||| Sbjct 1826619 CGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTT 1826678 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || || |||||||| || ||||||||||| || || ||||| || |||| ||| Sbjct 1826679 CGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCC 1826738 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || ||||| ||||||||||| || || |||||||| Sbjct 1826739 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGG 1826798 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTT 211116 ||||| ||||| || || || ||||| ||||| | |||||||| Sbjct 1826799 GTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1826841 Score = 167 bits (184), Expect = 5e-36 Identities = 169/220 (77%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| || || || || ||||||||||| || |||||||| || || | ||| || Sbjct 1945182 CGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTT 1945241 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || || |||||||| || ||||||||||| || || ||||| || || | ||| Sbjct 1945242 CGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATTCCC 1945301 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || ||||| || |||||||||||| || |||||||| Sbjct 1945302 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAGG 1945361 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCA 211113 ||||| ||||| || || || ||||| ||||| | |||| Sbjct 1945362 GTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1945401 >seq20 Length=352371 Score = 95.1 bits (104), Expect = 3e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| || |||||||| || ||||| || || || || ||||| ||||||| ||| ||| Sbjct 352359 CCATCCTCGAGCTGCTTACCAGCGAAAATCAGTCGCTGCTGGTCCGGAGGAATTCCCTCC 352300 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 |||||||| ||||| || ||||| ||||||||||| ||| Sbjct 352299 TTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAG 352258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151569302585