Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq7 178 1e-39 seq13 104 2e-17 >seq7 Length=4019465 Score = 178 bits (196), Expect = 1e-39 Identities = 399/595 (67%), Gaps = 21/595 (4%) Strand=Plus/Plus Query 27148 TCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCT 27207 |||||||||||| ||| || || |||||||||| |||||| | | |||||| || Sbjct 2470065 TCCACGTGATCCTTGTACACATGGGCGTCTCCCATGGTGTGAATGAGCTCTCCACAGTCC 2470124 Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 | ||||||| || || ||||| ||||| |||| |||| ||| ||||| ||||| Sbjct 2470125 AAATCGGTGACCTGGGCAATCATTCGGGTGAGCAGAGCGTAGGAGGCAATGTTGAAGGGG 2470184 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCT- 27326 || || || |||| ||| | || | ||| || ||||||||||| || ||| ||| | Sbjct 2470185 ACTCCAAGACCCAGGTCACATGATCGCTGATACAGCTGACACGACAGACGTCC-TCGTTC 2470243 Query 27327 ----------TACG-----TAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 |||| |||||||| || | ||| || |||||||| ||||| Sbjct 2470244 CGAGTTTTTGTACGACACATAAAACTGGCAAAACATGTGACAGGGAGGAAGCGCCATCTT 2470303 Query 27372 GCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCT 27431 | || ||||||||| || ||| ||||| || | ||| | |||||| | || Sbjct 2470304 TGGGAGATCGGCGGGGTTCCATGCAGACAGAATGATTCGACGGTCGTGAGGGTTGGTTCT 2470363 Query 27432 GATGAG-GTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCA 27490 || ||| || | | | || ||||| ||||| || || | ||| || ||| Sbjct 2470364 GA-GAGTGTGTATCACCTGTTTGAGCTGGTCCACGCCTTGGCCAGTGTAATCCGTG-TCA 2470421 Query 27491 TG-TCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCT 27549 | | ||||||| ||||||||||| | ||||||||| || || ||||||||||||||| Sbjct 2470422 CAATTCTTGTACTCGGCTCCGAAATGGCGCCATTGGAAGCCATAGACCGGTCCCAGGTCT 2470481 Query 27550 CCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCC 27609 |||||| ||||| | | || ||| |||| || || | || || || ||||| Sbjct 2470482 CCCTCTCGTCTGTGGCCCAGCCCGGCCTTTTCCAGGAACTCCTTAGATCCATTTCCGTCC 2470541 Query 27610 CAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCAC 27669 ||||| | | |||||| || | |||| || ||| | || || |||||| Sbjct 2470542 CAGATGTGAATGTTTTTCTCGCTCAGTTTTTTGCCGTCGGTGCATCCAGCCACAAACCAC 2470601 Query 27670 AGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 27724 | |||||||||| ||| | | ||||| | |||||| ||||| ||||||| Sbjct 2470602 AAAAGCTCCTCCAGAACGCCTCGGTAGAAGACTCGCTTGGTGGTGAGCAGGGGAA 2470656 >seq13 Length=841849 Score = 104 bits (114), Expect = 2e-17 Identities = 136/184 (74%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 48509 TCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGTGACAAGTTTGCGTC-C 48567 |||| |||||| | || | ||| ||| | ||| |||| || |||||||||||||| | Sbjct 377311 TCGTTAAGGTGCGAATGCGAACCACCAAGATCCCCCAGATTGGAGACAAGTTTGCGTCGC 377252 Query 48568 TTCACGGCGCAAAAGGGGACATGTGGAGC--CGTCCTGACCCAGGAGGACATGCCCTTCG 48625 |||||| || ||||| || ||| | ||| | ||| | ||||||||||| ||| Sbjct 377251 GTCACGGA-CAGAAGGGTACCATTGGTGTGACGTACCGAC--ATGAGGACATGCCGTTCT 377195 Query 48626 ACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGA 48685 | || || ||||| ||||| |||||||||||||||||||| |||| || | |||| Sbjct 377194 CCGCCGAGGGAGTGGTCCCCGATATCATCATCAACCCCCACGCCATTCCTTCGCGTATGA 377135 Query 48686 CCGT 48689 |||| Sbjct 377134 CCGT 377131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369507069402299