Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22]
29 sequences; 20,590,669 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq7 178 1e-39
seq13 104 2e-17
>seq7
Length=4019465
Score = 178 bits (196), Expect = 1e-39
Identities = 399/595 (67%), Gaps = 21/595 (4%)
Strand=Plus/Plus
Query 27148 TCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCT 27207
|||||||||||| ||| || || |||||||||| |||||| | | |||||| ||
Sbjct 2470065 TCCACGTGATCCTTGTACACATGGGCGTCTCCCATGGTGTGAATGAGCTCTCCACAGTCC 2470124
Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267
| ||||||| || || ||||| ||||| |||| |||| ||| ||||| |||||
Sbjct 2470125 AAATCGGTGACCTGGGCAATCATTCGGGTGAGCAGAGCGTAGGAGGCAATGTTGAAGGGG 2470184
Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCT- 27326
|| || || |||| ||| | || | ||| || ||||||||||| || ||| ||| |
Sbjct 2470185 ACTCCAAGACCCAGGTCACATGATCGCTGATACAGCTGACACGACAGACGTCC-TCGTTC 2470243
Query 27327 ----------TACG-----TAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371
|||| |||||||| || | ||| || |||||||| |||||
Sbjct 2470244 CGAGTTTTTGTACGACACATAAAACTGGCAAAACATGTGACAGGGAGGAAGCGCCATCTT 2470303
Query 27372 GCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCT 27431
| || ||||||||| || ||| ||||| || | ||| | |||||| | ||
Sbjct 2470304 TGGGAGATCGGCGGGGTTCCATGCAGACAGAATGATTCGACGGTCGTGAGGGTTGGTTCT 2470363
Query 27432 GATGAG-GTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCA 27490
|| ||| || | | | || ||||| ||||| || || | ||| || |||
Sbjct 2470364 GA-GAGTGTGTATCACCTGTTTGAGCTGGTCCACGCCTTGGCCAGTGTAATCCGTG-TCA 2470421
Query 27491 TG-TCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCT 27549
| | ||||||| ||||||||||| | ||||||||| || || |||||||||||||||
Sbjct 2470422 CAATTCTTGTACTCGGCTCCGAAATGGCGCCATTGGAAGCCATAGACCGGTCCCAGGTCT 2470481
Query 27550 CCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCC 27609
|||||| ||||| | | || ||| |||| || || | || || || |||||
Sbjct 2470482 CCCTCTCGTCTGTGGCCCAGCCCGGCCTTTTCCAGGAACTCCTTAGATCCATTTCCGTCC 2470541
Query 27610 CAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCAC 27669
||||| | | |||||| || | |||| || ||| | || || ||||||
Sbjct 2470542 CAGATGTGAATGTTTTTCTCGCTCAGTTTTTTGCCGTCGGTGCATCCAGCCACAAACCAC 2470601
Query 27670 AGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 27724
| |||||||||| ||| | | ||||| | |||||| ||||| |||||||
Sbjct 2470602 AAAAGCTCCTCCAGAACGCCTCGGTAGAAGACTCGCTTGGTGGTGAGCAGGGGAA 2470656
>seq13
Length=841849
Score = 104 bits (114), Expect = 2e-17
Identities = 136/184 (74%), Gaps = 6/184 (3%)
Strand=Plus/Minus
Query 48509 TCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGTGACAAGTTTGCGTC-C 48567
|||| |||||| | || | ||| ||| | ||| |||| || |||||||||||||| |
Sbjct 377311 TCGTTAAGGTGCGAATGCGAACCACCAAGATCCCCCAGATTGGAGACAAGTTTGCGTCGC 377252
Query 48568 TTCACGGCGCAAAAGGGGACATGTGGAGC--CGTCCTGACCCAGGAGGACATGCCCTTCG 48625
|||||| || ||||| || ||| | ||| | ||| | ||||||||||| |||
Sbjct 377251 GTCACGGA-CAGAAGGGTACCATTGGTGTGACGTACCGAC--ATGAGGACATGCCGTTCT 377195
Query 48626 ACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGA 48685
| || || ||||| ||||| |||||||||||||||||||| |||| || | ||||
Sbjct 377194 CCGCCGAGGGAGTGGTCCCCGATATCATCATCAACCCCCACGCCATTCCTTCGCGTATGA 377135
Query 48686 CCGT 48689
||||
Sbjct 377134 CCGT 377131
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369507069402299
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |