Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22]
29 sequences; 20,590,669 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq14 167 5e-36
seq9 116 8e-21
seq23 105 1e-17
>seq14
Length=2997610
Score = 167 bits (184), Expect = 5e-36
Identities = 175/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || || || || || ||||| | ||| || || ||||||||||||||||
Sbjct 1826612 ACCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1826671
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || ||||| ||||| || || || ||||| ||||| | || || ||||| ||
Sbjct 1826672 AAGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 1826731
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||| | || ||| | ||||| ||||| |||| || ||
Sbjct 1826732 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 1826791
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTT 283101
||||| ||||| |||||||| || | ||||| || || ||||||||||
Sbjct 1826792 CTCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1826841
Score = 131 bits (144), Expect = 4e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| || || || || || || ||||| | ||| || || |||||||||||||| |
Sbjct 1945175 ACCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 1945234
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || ||||| ||||| || || || ||||| ||||| | || || ||||| ||
Sbjct 1945235 AAGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 1945294
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| | || ||| | || || ||||| || | || ||
Sbjct 1945295 GATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCAC 1945354
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCA 283098
||||| ||||| ||||| || || | ||||| || || || ||||
Sbjct 1945355 CTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1945401
>seq9
Length=1942798
Score = 116 bits (128), Expect = 8e-21
Identities = 135/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 317020 TCCTTCGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTG 317079
|||| || ||||| || || | ||||||||| |||| || | |||||| || |||||
Sbjct 1640485 TCCTGGGTGGGGAAACCCTCGACCTGACCGTTGGCAATGGCTCGCATCAGGGTGGACTTA 1640426
Query 317080 CCAGCACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTG 317139
|||||||| || || || || ||||| || || || ||| || | ||||
Sbjct 1640425 CCAGCACCGTTAGGACCACAGAGACCGTATCGTCGGCCTCGCTTGAGTCGCAGCTGGGTT 1640366
Query 317140 TTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCG 317199
|||||| ||||||||| |||| || ||||||||||||||||| | |||||| ||||||
Sbjct 1640365 CGGTTCAGCAGAATCTTAGCACCGTAAGCCAGAGAGAACTCACAGTTACACAGATCCTCG 1640306
Query 317200 CC 317201
||
Sbjct 1640305 CC 1640304
Score = 87.8 bits (96), Expect = 4e-12
Identities = 111/152 (73%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 315708 GAGACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTG 315767
|||| ||||| |||| | ||||||| ||||||||||| ||||| | |||||| | ||
Sbjct 1641825 GAGAGTCTCGA--TCCAGATAGTTGGTAGGCTCATCAAGGACGATAAGATGGGGTCGCTG 1641768
Query 315768 CCATAGAGCGGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCG 315827
||| | |||| | | || ||||| | || || ||||||||||| || ||||| ||
Sbjct 1641767 CCAGGTACAGGCGGCAAGCACAAGCTTGACCTTCTGACCACCAGACAGACCTCGGATTCG 1641708
Query 315828 AGAATGAGTGGTAAATTCTGGGTCAAGGCCAA 315859
||| |||| | || || || || || ||||
Sbjct 1641707 AGAGTGAGAGACAAGCTCGGGCTCGAGACCAA 1641676
>seq23
Length=2267247
Score = 105 bits (116), Expect = 1e-17
Identities = 566/889 (64%), Gaps = 23/889 (3%)
Strand=Plus/Plus
Query 229535 CTTCCCTATTCAATACCCCGACCTCTGGGATATGTATAAGAAGGCGGTGGCAACCTTTTG 229594
|||||| || || |||| ||| ||||| | ||||| |||||||| | ||| | || ||
Sbjct 1856946 CTTCCCCATCCAGTACCACGAAATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTG 1857005
Query 229595 GACCACGGAGGAAGTCCCCCTA--AATGCAGACGTCGTCGACTGGCGCGAGAA---ACTC 229649
||| | ||||| | || || | ||| | | |||||| ||||| ||||
Sbjct 1857006 GACAGCTGAGGAGATTGATCTTGGAAAG--GACATGGGTGACTGG---GAGAACAGACTC 1857060
Query 229650 AACGACGATGAACGCCATTTCATCAAGCACATTCTCGGGTTTTTTGCAGGTTCCGACGGT 229709
||| ||||||| || |||||| ||| |||||| || ||||| | |||||||||
Sbjct 1857061 AACAACGATGAGCGGTTCTTCATCTCCCACGTTCTCGCATTCTTTGCTGCCTCCGACGGT 1857120
Query 229710 ATCGTGATGGAAAACTTGCA-GACTAACTTCAGCGTCGAAGTAACGGTCCCAGAGGCACG 229768
||||| | || ||| || || | ||| || ||| || || ||| |||||
Sbjct 1857121 ATCGTTAACGAGAACCTGGTTGAGCGA-TTCTCCGGCGAGGTGCAGGCCCCCGAGGCCAA 1857179
Query 229769 GCAGTTTTACGCATACCAGACGTTCAATGAATCTGTTCATTCGGAACAGTATGCCCTTCT 229828
| || |||| | ||||| | | || | || || || || | || ||
Sbjct 1857180 GTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCGCTGCT 1857239
Query 229829 TATTGACGCGCTCATTTCCGACGAGCGAGAGCGTGCCGAACTGTTCGACGCCATCGAAAA 229888
|| ||| | ||| ||| |||||| || | |||||| |||||||||| |
Sbjct 1857240 GATCGACACATACATCAAGGACCCCAAAGAGCGAACCTACCTGTTCAACGCCATCGAGAC 1857299
Query 229889 CATCCCGGCGGTCCATAACAAAGCGCGTTGGGCTCAGAAGTGG--CTGGAACCCAG--TA 229944
|||||| || | || || || ||||| | |||||| || || || |
Sbjct 1857300 CATCCCCTGCATCAAGAAAAAGGCCGACTGGGCCCTCAAGTGGATCTCCGACGAAGAGTC 1857359
Query 229945 AATCGTTTGCAGAGCGTCTCGTCGCGTGGGTGTGCGTTGAGGGTATTCTGTTCTCCGGGA 230004
| | |||| |||||| ||| | || | | ||| ||||| || | ||||||||
Sbjct 1857360 CACC-TTTGGAGAGCGACTCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCT 1857418
Query 230005 GTTTCTGCGCCATCTTTTGGCT-ACGCAACAAGGGCGTCATGCCCGGGCTCGGTCTGTCG 230063
|||| | ||||||| ||||| | | | | ||| | ||||||| || ||| | ||
Sbjct 1857419 CTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTC-TCATGCCTGGCCTCACCTTCTCC 1857477
Query 230064 AACGAATTCATCAGCAGGGACGAAGGTCTTCACCAGCAATTTGGCGAGGTCTTGTATTCG 230123
||||| ||||| | | ||||| ||||| ||| | |||| | | | | |||
Sbjct 1857478 AACGAGCTCATCTCCCGAGACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTTTTCTCG 1857537
Query 230124 AAGCTAAATAACAAACTACCTTTC-GAA-ACGGTGAAACAAATCGTCACAGAAGTAGTTG 230181
| || | ||| || ||| ||| | || | | || | || | ||||
Sbjct 1857538 CACCTTGAGAACCGAC--CCTCAAAGAAGATTGTTGAGGACGTCATTGTCGAGGCTGTTG 1857595
Query 230182 CAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTG 230241
| || |||||||| || |||||| | || || |||| | || ||||| ||
Sbjct 1857596 GCATCGAGCAGGAGTTCCTTACTGACGCTCTGCCCTGTGGTCTGCTTGGTATGAACGCCA 1857655
Query 230242 ATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACG 230301
| || ||| | || || ||||| || || ||||| ||| | | || || || || ||
Sbjct 1857656 AGCTGATGTGCCAGTACATCGAGTTTGTCGCTGACCGTCTGCTAGTTGCTCTCGGTAACT 1857715
Query 230302 AGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGA 230361
|| ||||||||||||| |||||||||| || |||||| ||| || || || |
Sbjct 1857716 CCAAGGTGTATAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGCCGGCA 1857775
Query 230362 AAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410
| || ||||| ||||| ||||| || ||| || || | | |||||||
Sbjct 1857776 AGACCAACTTTTTCGAGAAGCGAGTGTCCGACTACCAGAAGGCCGGTGT 1857824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046738811070966
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |