Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq6 163 6e-35 seq1 120 6e-22 >seq6 Length=2655350 Score = 163 bits (180), Expect = 6e-35 Identities = 320/469 (68%), Gaps = 8/469 (2%) Strand=Plus/Plus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 |||| |||||| || |||||| | ||||| |||||| | || ||||| ||| Sbjct 574749 TTTGGCGAGCGACTTATCGCCTTTGCTGCCGTTGAGGGTATTTTCTTCTCCGGATCTTTT 574808 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 | |||| || ||||| ||| |||| | ||||||||||| | || |||||| Sbjct 574809 GCCTCCATTTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAG 574868 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCT 230351 |||| ||| || |||||||| || || | | || | | || | | || | || Sbjct 574869 CTCATTTCTCGAGATGAGGGTCTGCA-CACCGACTTTGCCTGTCTGCTCTTCTCTCACCT 574927 Query 230352 CCAGAACAAGCTACCATTCGAGACG---GTCAAACAAATCATTACAGAAGCAGTTGAAAA 230408 | ||||| | ||| | | ||| | ||| | | ||||| || || |||| | Sbjct 574928 CGAGAAC---CGACCCTCCAAGAAGATTGTCGAGGACGTCATTGTCGAGGCTGTTGGCAT 574984 Query 230409 CGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACT 230468 || |||||||| || ||| ||| | || ||| | || | || |||||||| | || Sbjct 574985 TGAGCAGGAGTTCCTTACTGATGCTCTCCCTTGTGGTCTGCTCGGTATGAACGCCAAGCT 575044 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| |||||||||| || || || |||||||| | ||||||| ||||| || || Sbjct 575045 CATGCGACAGTACATTGAGTTTGTGGCCGACCGTCTGCTTGTTGCTCTTGGAAACCCCAA 575104 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 || |||||||| | |||||||||| || |||||| |||||| || || ||||| Sbjct 575105 GGTCTACAACTCCACCAACCCCTTTGACTTCATGGAGAACATTTCTCTGGCTGGAAAGAC 575164 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 |||||||||||| ||||| || |||||| |||| | | ||||| ||| Sbjct 575165 CAACTTCTTCGAGAAGCGAGTGTCTGACTACCAGAAGGCCGGTGTCATG 575213 >seq1 Length=4845111 Score = 120 bits (132), Expect = 6e-22 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 319857 GGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCC 319916 |||||| || || | ||||||||| |||| || |||||||| || || ||||| || || Sbjct 2675900 GGGGAAACCCTCGACCTGGCCGTTGGCAATGGCTCGCATCAGAGTAGACTTACCAGCACC 2675959 Query 319917 GTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAG 319976 ||| || |||||||||||||| || || || || || | | | || |||||| Sbjct 2675960 GTTGGGGCCACACAGACCGTATCGTCGGCCTCGCTTGAGACGCAGCTGGGTTCGGTTCAG 2676019 Query 319977 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030 ||||| || |||| || |||||||| || ||||| | ||||||||||||||| Sbjct 2676020 CAGAATCTTGGCACCGTAAGCCAGAGAGAACTCACAGTTACACAGATCCTCACC 2676073 Score = 96.9 bits (106), Expect = 7e-15 Identities = 244/361 (68%), Gaps = 14/361 (4%) Strand=Plus/Plus Query 319313 TGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGGG 319372 ||| |||||| ||||| |||||||||||||| | || ||| | | || Sbjct 2675368 TGACACCCTCAAGGAAACCGGGCTCGGGGAAGGAGAAGTTGATCTCGGAGGCTCCCAGCT 2675427 Query 319373 CGTAGTA--ACTCG-CTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGT 319429 ||||||| ||| | | || || || |||||| || |||||||| || || ||||||| Sbjct 2675428 CGTAGTAGGACTTGGCGGAA--GGCAC-CTTCTTGACAAACTCGGAGAGGTTACCCTTGT 2675484 Query 319430 ACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGA 319489 |||| |||||| | | ||||| |||||||| | ||| || |||||||| Sbjct 2675485 ACTTTCGCAGCTT---GAATCGCTCGTAGTGGATAATGTACTCGCAGACGTTGTCGAGGA 2675541 Query 319490 ACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAA 319549 | || ||||| || ||||| || | | | | | | | ||| || | ||||| | | Sbjct 2675542 AACCAGAGTCATGGGACACGATGATGGAGGTGA--TACCACAGG-TGTTGAGGTAGTTGA 2675598 Query 319550 TCAACCACCTCACGTTAGAC-ACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGC 319608 |||||| |||||| ||| | ||||||||||| ||||| ||||| ||||| | Sbjct 2675599 CCAACCAGGCCACGTT-GACGGTATCCAGATGGTTGGTGGGCTCATCAAGCAGCAGGATA 2675657 Query 319609 TTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCGGAAAGA 319668 | || || | || | || || ||||| || ||||| ||||| |||||||| ||| Sbjct 2675658 TCGGCCTTTCGCAGAACGGCGGTGGCCAGAGCCAGCTTCATCTTCCATCCTCCGGACAGA 2675717 Query 319669 G 319669 | Sbjct 2675718 G 2675718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823742485970