Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq6 163 3e-35 >seq6 Length=2655350 Score = 163 bits (180), Expect = 3e-35 Identities = 391/588 (66%), Gaps = 15/588 (3%) Strand=Plus/Minus Query 16960 CAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGT 17019 |||||| || || ||| || | ||||| |||| || || ||||| || || || Sbjct 574913 CAGACAGGCAAAGTCGGTGTGCAGACCCTCATCTCGAGAAATGAGCTCGTTGGAGAAGGT 574854 Query 17020 CAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAA 17079 || || ||||| ||||| ||||| | ||| || || | ||| || || || || || Sbjct 574853 CAGGCCAGGCATGAGACCTCGCTTCTTGAGCCAGAAAATGGAGGCAAAAGATCCGGAGAA 574794 Query 17080 GAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTT 17139 ||| |||||||| |||| ||||| ||||| | ||| ||| | | || | || | || Sbjct 574793 GAAAATACCCTCAACGGCAGCAAAGGCGATAAGTCGCTCGCCAAAGGTAGACTCGTCGTC 574734 Query 17140 ACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC 17199 ||||| || | |||| ||||| || | ||| ||||| || || || ||||| Sbjct 574733 GGAGATCCACTTGAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGGTCTCAATGGC 574674 Query 17200 CTTAAA----TAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGC 17255 || || ||| ||| || ||| |||| | || || ||||| ||||| || Sbjct 574673 GTTGAACAGGTAAGTTCGCT----CCTTGGGGTCCTTGATGTAAGTATCAATGAGCAGAG 574618 Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTT 17315 ||| | ||||| || ||||||||||| ||||| |||||||| ||||| ||| | Sbjct 574617 AGTAGGTCTCGGAATGGATGTTCTCCATCATGATCTGGAATCCGTAGAAGCACTTGGCCT 574558 Query 17316 CCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGC 17375 | | ||||| || | |||| || || | || || ||||| || || ||||| Sbjct 574557 CAGGAGCCTGAACCTCTCCAGAGAACCGCTCAACCAGGTTCTCGTTGACAATACCGTCAG 574498 Query 17376 TCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGC 17435 || || || || |||| | ||| ||||||| | || |||| || ||| || | Sbjct 574497 AGGCAGCAAAGAAAGCCAGCACGTGCGAAATGAAAAACTTCTCGT-CGCTGT-TGAGCCG 574440 Query 17436 G-----CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGC 17490 | |||||| | ||| ||| | ||| | || |||| |||||| ||| ||| Sbjct 574439 GTTCTCCCAGTCGCCCATATCCTTGCCGAGATCAATCTCCTCGGCGGTCCAGAAAGAAGC 574380 Query 17491 CACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 | | ||||| || ||||| | |||||| |||| ||| || || ||||| Sbjct 574379 CTCGGCCTTCTTGTACATCTGCCAAATCTCATGGTACTGAATAGGGAA 574332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545477082920