Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq6 205 1e-47 seq5 165 1e-35 >seq6 Length=2655350 Score = 205 bits (226), Expect = 1e-47 Identities = 402/592 (68%), Gaps = 8/592 (1%) Strand=Plus/Minus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 || ||| || || ||| ||| |||||||| |||| | ||| | |||||||| || || Sbjct 574913 CAGACAGGCAAAGTCGGTGTGCAGACCCTCATCTCGAGAAATGAGCTCGTTGGAGAAGGT 574854 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 24250 || || ||||| || || ||||| || ||||| || ||||| ||||| ||||| || || Sbjct 574853 CAGGCCAGGCATGAGACCTCGCTTCTTGAGCCAGAAAATGGAGGCAAAAGATCCGGAGAA 574794 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CGCTGTC 24307 |||||| || || || || |||||||| ||||||| || ||| | | || ||| Sbjct 574793 GAAAATACCCTCAACGGCAGCAAAGGCGATAAGTCGCTCGCCAAAGGTAGACTCGTCGTC 574734 Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 |||||||| ||||||| ||||||||||| || | || || || ||||| || || Sbjct 574733 GGAGATCCACTTGAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGGTCTCAATGGC 574674 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 || || || || || || || || || | || |||||||| | ||| || Sbjct 574673 GTTGAACAGGTAAGTTCGCTCCTTGGGGTCCTTGATGTAAGTATCAATGAGCAGAGAGTA 574614 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 | || ||||| ||||| || || || || ||||||||||| || | ||||| | Sbjct 574613 GGTCTCGGAATGGATGTTCTCCATCATGATCTGGAATCCGTAGAAGCACTTGGCCTCAGG 574554 Query 24488 AATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 24547 | ||| || ||| | | || || || | | || || || || || |||||| ||| Sbjct 574553 AGCCTGAACCTCTCCAGAGAACCGCTCAACCAGGTTCTCGTTGACAATACCGTCAGAGGC 574494 Query 24548 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTAT 24603 ||||| || |||| || || || ||| | || ||||| | |||| | || | Sbjct 574493 AGCAAAGAAAGCCAGCACGTGCGAAATGAAAAACTTCTCGTC-GCTGTTGAGCCGGTTCT 574435 Query 24604 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 24663 ||| || ||||| || | ||| | || || | ||||| || || ||||| | Sbjct 574434 CCCAGTCGCCCATATCCTTGCCGAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGG 574375 Query 24664 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 |||| || ||||| | ||| || ||||| || ||||| || || | ||||| Sbjct 574374 CCTTCTTGTACATCTGCCAAATCTCATGGTACTGAATAGGGAAGAGCACAAA 574323 >seq5 Length=2743614 Score = 165 bits (182), Expect = 1e-35 Identities = 622/949 (66%), Gaps = 40/949 (4%) Strand=Plus/Minus Query 53710 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 53769 ||| |||||||||||||| || || || | || | || ||||| || |||||||| || Sbjct 1439859 AGAAGCCAGATTACAAACAGCAACTTCTTCAGGAGACGAGTATTGAATAATCTCAGTACA 1439800 Query 53770 AAGATTACTAC-ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 53828 | ||| | || | ||||| || || | ||| || || || || |||||| | Sbjct 1439799 CAAATT-CGACGATTTGATCGTACCGAGATTCTGCTGGTTGGATTTCGCGTTACAGCTGT 1439741 Query 53829 CCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCT--ATAATCGCTTTCCA 53886 | ||||| || ||||| || || ||||| || || | || | |||||| || | Sbjct 1439740 CTTTATACAGCATGAACGGACCTCCTGTTTCGATTTG--ACTCGTGAGAATCGCCTTGAA 1439683 Query 53887 GACGACACGAGCCTTTATTATAGATTTGTAT---CTCTT-TTCTCTTTCGTATAGTGTAT 53942 | | |||| || ||| ||| ||||| | ||| ||||| | | || || Sbjct 1439682 CAGCTCCTGAGCGTTGATTTGAGAATTGTACAGCCCCTTCTTCTCATACTCATTGT---- 1439627 Query 53943 ACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA-CAC 54001 |||| | || || ||||||||||| |||| ||| ||| ||| | | || || || Sbjct 1439626 ACAACCTCTCGAAATCGTCTCCCCAGACATCAGCCAGTCCTGGAGCT-CTTCTGGGGCAG 1439568 Query 54002 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 54061 | | |||||| | | || | | | ||| ||||||||| | |||||| | ||| ||| Sbjct 1439567 AAAAGCGACCATTTTTCGCCGTTTTCGACTTTTTTCATAAACAAATCAGGCACCCAGAGA 1439508 Query 54062 GCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 54120 || ||| || || || | | ||| | |||||| || ||| ||| | || || Sbjct 1439507 GC-ATAGAACAGGTCACGTGCTCTGTTTTCCTCTGCGCCATGATTTTTTCGCAAATTCAG 1439449 Query 54121 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTT 54180 || ||| |||||| | |||||| || ||||| || | | | ||||||| ||||| Sbjct 1439448 AAAATCCAAAATATCCGCATGCCAAGGCTCCAAATACACTGCAAACGCTCCAGGTCGTTT 1439389 Query 54181 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 54240 |||||| || ||||| | ||| | ||||| || || | ||||| | ||| |||| || Sbjct 1439388 GTTTCCCCCTTGATCAACGTACCGTGCGGTATTGTTGAACACTCTGAGCATGGGAACGAT 1439329 Query 54241 ACCATTGGATGCACCATTGGTCCCGGAGAT-ATAGCTTCCACTGGCACGAATATTACTAA 54299 ||| || || | | || | || | ||| ||| |||| | || || || Sbjct 1439328 ACCTGAAGACCGTCCTTGAGAACCTGTAATGAGAGC-TCCTTTGGCTCTGATGTTGTGAA 1439270 Query 54300 TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT-AACGTATCA 54358 | |||||||| || ||||| |||| || || || || |||||| | ||| || Sbjct 1439269 TATGCAGACCTATACCTCCTGCTGTTTTGGAAATCTGAGCACA-CGTTTTGAGCGTGTCG 1439211 Query 54359 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 54418 |||||||| || || || | |||| || ||||||||| ||| | ||| Sbjct 1439210 TAGATGCCGTCAATGGAGTCTGCTGCCATGGCAACGAGAAAACAG---GACGAAAGCTGA 1439154 Query 54419 C---GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG-- 54473 | || ||| || ||||| || |||||||||||||| || || ||| ||| | || Sbjct 1439153 CCCTGAGGAGTACCTGCATTGAACAAGGTAGGAGAAGCATGAGTGAAC--TTTCTGAGAG 1439096 Query 54474 --AAAGTAGATTGTACGTCTCGA-TAGCTGAGTCTATATCCCATTGATGAATTCCTACTG 54530 |||| ||| |||||| |||| | || || |||| | || || ||| || Sbjct 1439095 ATAAAGCAGA--GTACGTTTCGAGCACCTTGGT-GGTATCGTCTCCGTGGATGGCTAGTG 1439039 Query 54531 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT-TGTTTATTTTCAGCAAG 54589 || ||||| | ||| || ||||||||||| || | || || | ||| ||| | | Sbjct 1439038 ATACTCGCATGAGCATCTGTTGAGGTCTTTCCACTA-CTCGTCCCTGGATTCTCAAAAGG 1438980 Query 54590 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 54638 || ||||||||||| || || || ||||| ||| ||| | | ||||| Sbjct 1438979 TACGATTTTTCCAACGTCTTGAATCCAAAGTAGGAGTAAGTGAGGTCTC 1438931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721458991120