Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016-
03-01] 19 sequences; 21,758,297 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq2 123 2e-23
seq1 104 2e-17
>seq2
Length=4150472
Score = 123 bits (136), Expect = 2e-23
Identities = 163/226 (72%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| ||||| || | || || | ||| | |||||||||||| || ||||| ||||| |
Sbjct 3374809 CCACCTCGGAGTCGCAGAACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 3374868
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| ||| || ||||||| ||||| ||||| || |||| |||| |||||||||| |||
Sbjct 3374869 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCCGGGGGA 3374928
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| || || | | | | || || | ||||
Sbjct 3374929 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 3374988
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCA 21174
|| | ||| ||||||||||| || | || |||||||| |||||||
Sbjct 3374989 TCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 3375034
Score = 120 bits (132), Expect = 3e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| ||||| || | || || | ||| | |||||||||||| || ||||| ||||| |
Sbjct 3070617 CCACCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 3070558
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|||||| || ||||||| ||||| || || || | ||||||| |||||||||| |||
Sbjct 3070557 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 3070498
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || |||||||| |||||| || || | | ||| || || | ||||
Sbjct 3070497 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 3070438
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTT 21177
|| | ||| || ||||| ||||| | || |||||||| || |||||||
Sbjct 3070437 TCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 3070389
>seq1
Length=4845111
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| ||||| || | |||||| | || | |||||| ||||| || ||||||||||| |
Sbjct 2006531 CCACCTCGGAGTCGGAGCACAAGGTGGAGAGTGGATTCCTTCTGGATGTTATAGTCAGAA 2006590
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|||||| | ||||||| ||||| || || || | ||||||| |||||||||| |||
Sbjct 2006591 AGGGTTCGTCCGTCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 2006650
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || |||||||| |||||| || || | | | | || || || |||
Sbjct 2006651 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCAACC 2006710
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | || || ||||| || || | || |||||||| || |||||
Sbjct 2006711 TCAAGAGTGATAGTCTTTCCAGTCAGAGTCTTGACAAAGATCTGCAT 2006757
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| ||||| || | ||| || | ||| | ||||||||||| || ||||| ||||| | |
Sbjct 2007410 CCACCTCGGAGTCGGAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2007469
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| ||| | ||||||| ||||| || || || |||| |||| |||||||||| |||
Sbjct 2007470 AGAGTTCGTCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGG 2007529
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || |||||||| ||||| || || | | | | || ||| | |||
Sbjct 2007530 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGACTCGACC 2007589
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| || ||||||||||| | || ||||| || || |||||
Sbjct 2007590 TCAAGGGTGATAGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 2007636
Score = 104 bits (114), Expect = 2e-17
Identities = 123/167 (74%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| ||||| || | ||| |||| ||| | |||||||||||| |||||||| ||||| |
Sbjct 2007638 CCACCTCGGAGTCGGAGGACCAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAG 2007697
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|||||| || | ||||| ||||| || || || | || |||| |||||||||| |||
Sbjct 2007698 AGGGTTCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGGTCCGGGGGG 2007757
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATC 21115
| || |||||||| ||||| || || | | ||| ||||||
Sbjct 2007758 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTATC 2007804
Score = 102 bits (112), Expect = 7e-17
Identities = 101/131 (77%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 23809 ACGTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGCGCCGTGTCTCTGGCGG 23868
|||||||| ||||| || ||||||||||| | | ||| ||| || ||||| ||| |
Sbjct 2763686 ACGTTGCCGAGGTCTCCAACGTGTCGCTCAGTGTCGTTGGGGGCTCCGTGGTTCTTCTTG 2763627
Query 23869 GTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGC 23928
|||||| ||||| ||| ||||| |||||||||||| || |||| || || ||||||
Sbjct 2763626 AAGGGGTTGAAGTGGGGGCCGGCGGAGGTGCAGCCGTTGGTGTTGTCTCCAAACTCGTGC 2763567
Query 23929 ACGTGAAAACC 23939
||||| || ||
Sbjct 2763566 ACGTGGAAGCC 2763556
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| ||||| || | ||| || | ||| | ||||||||||| || ||||| || || | |
Sbjct 2006954 CCACCTCGAAGTCGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAC 2007013
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| ||| | | ||||| ||||| || || || | ||||||| |||||||||| |||
Sbjct 2007014 AGAGTTCGTCCATCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 2007073
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || |||||||| ||||| || || | | | | || ||| | |||
Sbjct 2007074 ATTCCCTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCAGAAGACTCAACC 2007133
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| |||||||| || || | || |||||||| || |||||
Sbjct 2007134 TCGAGGGTGATGGTCTTTCCAGTCAGAGTCTTGACAAAGATCTGCAT 2007180
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| ||||| || | || |||| ||| | ||| |||||||| || ||||| ||||| | |
Sbjct 2007182 CCACCTCGAAGTCGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 2007241
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| ||| | | || || ||||| || || || |||| |||| |||||||||| |||
Sbjct 2007242 AGAGTTCGTCCATCTTCGAGCTGCTTACCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGA 2007301
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || |||||||| ||||| || || | | | | || || || |||
Sbjct 2007302 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACC 2007361
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | |||||||||||| || || | || || || || || |||||
Sbjct 2007362 TCAAGGGTAATGGTCTTTCCAGTGAGGGTCTTCACGAAAATCTGCAT 2007408
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422259102220604
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |