Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq6 370 1e-97 seq2 150 2e-31 seq1 138 1e-27 >seq6 Length=2655350 Score = 370 bits (410), Expect = 1e-97 Identities = 598/851 (70%), Gaps = 13/851 (2%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| ||||| |||||| ||| ||||| ||| | ||||| || || |||| || Sbjct 574293 GAGCCTCTGCTCAAGGAGAACAACCGACGGTTTGTGCTCTTCCCTATTCAGTACCATGAG 574352 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||||| ||||||| | || || Sbjct 574353 ATTTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAGATTGATCTC 574412 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||| | | ||||||||||| || | ||| | ||||| |||||| | Sbjct 574413 GGCAAGGATATGGGCGACTGGGAGAACCGGCTCAACAGCGACGAGAAGTTTTTCATTTCG 574472 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||||||||| || || || ||| ||||| || ||||||||||| ||||| ||||| Sbjct 574473 CACGTGCTGGCTTTCTTTGCTGCCTCTGACGGTATTGTCAACGAGAACCTGGTTGAGCGG 574532 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| || ||||| |||| | ||||| |||||||||||| || |||||| ||| Sbjct 574533 TTCTCTGGAGAGGTTCAGGCTCCTGAGGCCAAGTGCTTCTACGGATTCCAGATCATGATG 574592 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCG 116929 |||||| | || || || | || || ||||| || || ||| | | | | | Sbjct 574593 GAGAACATCCATTCCGAGACCTACTCTCTGCTCATTGATACTTACATCAAGGACCCCAAG 574652 Query 116930 GAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCC 116989 || | ||| | | |||| |||||||| ||||| || || ||| |||| |||||||| Sbjct 574653 GA-GCGAACTTAC--CTGTTCAACGCCATTGAGACCATTCCCTGCATCAAGAAGAAGGCC 574709 Query 116990 GAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049 || ||||| || |||||| ||| | ||| | |||| |||||||| || | ||| Sbjct 574710 GACTGGGCTCTCAAGTGGATCTCCGACGACGAGTCTACCTTTGGCGAGCGACTTATCGCC 574769 Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109 || || ||||| ||||| | ||||| || || ||| ||| |||| || ||||||||| Sbjct 574770 TTTGCTGCCGTTGAGGGTATTTTCTTCTCCGGATCTTTTGCCTCCATTTTCTGGCTCAAG 574829 Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169 || || || |||||||| |||||||| ||| |||||||||||| || | || |||||| Sbjct 574830 AAGCGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATTTCTCGAGATGAGGGT 574889 Query 117170 CTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCG 117229 ||||| ||||||||||||| |||| ||| || | | | | ||||| | | | Sbjct 574890 CTGCACACCGACTTTGCCTGTCTGCTCTTCTCTCACCTCGAGAACCGACCCTCCAAGAAG 574949 Query 117230 CGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCG 117289 ||| ||| || | ||| || || | ||| |||||| ||||| || || || Sbjct 574950 ATTGTCGAGGACGTCATTGTCGAGGCTGTTGGCATTGAGCAGGAGTTCCTTACTGATGCT 575009 Query 117290 CTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCG 117347 || || ||| ||||||| || | || || || | ||| || ||||| ||||| | Sbjct 575010 CTCCCTTGTG-GTCTGCTCGGTATGAA-CGCCAAGCTCATGCGACAGTACATTGAGTTTG 575067 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGC 117407 | |||||| | ||||| | | || | | ||||| ||||||| | ||||||| Sbjct 575068 TGGCCGACCGTCTGCTTGTTGCTCTTGGAAACCCCAAGGTCTACAACTCCACCAACCCCT 575127 Query 117408 TGGACTTTATG 117418 | ||||| ||| Sbjct 575128 TTGACTTCATG 575138 >seq2 Length=4150472 Score = 150 bits (166), Expect = 2e-31 Identities = 164/215 (76%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750 ||||||| || || || || || || ||||| ||||||||| |||| || || | ||| Sbjct 3375034 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCG 3374975 Query 40751 ACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | |||| ||||| || || | ||||| |||||||| ||| |||||||| Sbjct 3374974 ACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 3374916 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||| | ||| ||||| ||||| || |||| || || ||| ||||||||| Sbjct 3374915 CAGCGACTCATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTCTCTGACTACAAC 3374856 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| |||| || ||||| || |||| Sbjct 3374855 ATCCAGAAGGAGTCCACTCTCCATCTTGTTCTGCG 3374821 Score = 129 bits (142), Expect = 6e-25 Identities = 161/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747 ||||||| || || || || || || || || || || |||||| | || || || | Sbjct 3070389 AAATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTT 3070448 Query 40748 CCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | |||| ||||| || || | ||||| ||||| || ||| ||||| Sbjct 3070449 CCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAC 3070507 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| ||||| |||| ||| || || ||||| || |||| || ||||| |||||| Sbjct 3070508 CAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTAC 3070567 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||||| |||| || ||||| || |||| Sbjct 3070568 AACATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCG 3070605 >seq1 Length=4845111 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || |||||| | || ||||| | | Sbjct 2007636 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACTATCACCCTTGAGGTCGAGTCTTCT 2007577 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| ||||| ||||| |||||| ||||||| Sbjct 2007576 GACACCATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGAATCCCCCCGGACCA 2007518 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||||||| | ||| || || ||||| || |||| || || || |||||||| Sbjct 2007517 GCAGCGACTCATTTTCGCTGGAAAGCAGCTTGAGGACGGACGAACTCTGTCTGACTACAA 2007458 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| || ||||| || Sbjct 2007457 CATCCAGAAGGAGTCCACCCTTCATCTTGT 2007428 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || ||||| ||| | || ||||| || || Sbjct 2007408 ATGCAGATTTTCGTGAAGACCCTCACTGGAAAGACCATTACCCTTGAGGTCGAGTCCTCC 2007349 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || |||| ||||| ||||| || ||| |||||||| Sbjct 2007348 GACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAG 2007289 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||| | ||| || || ||||| || || | || || || |||||||||| Sbjct 2007288 CAGCGACTCATTTTCGCTGGTAAGCAGCTCGAAGATGGACGAACTCTGTCCGACTACAAC 2007229 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || ||||| || Sbjct 2007228 ATCCAGAAGGAGTCTACTCTCCATCTGGT 2007200 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || ||||||||| |||| || || | | Sbjct 2007180 ATGCAGATCTTTGTCAAGACTCTGACTGGAAAGACCATCACCCTCGAGGTTGAGTCTTCT 2007121 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| ||||| ||||| || ||| ||||||| Sbjct 2007120 GACACCATTGACAACG-TCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCA 2007062 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| ||| || || ||||| || || | || || || || ||||| Sbjct 2007061 GCAGCGACTTATCTTCGCCGGTAAGCAGCTTGAGGATGGACGAACTCTGTCTGATTACAA 2007002 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| || ||||| || Sbjct 2007001 CATCCAGAAGGAGTCCACCCTTCATCTCGT 2006972 Score = 120 bits (132), Expect = 3e-22 Identities = 110/138 (80%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| ||||| || |||| ||||| ||||| |||||| |||||||||| |||||||| Sbjct 2007792 AACG-TCAAGTCCAAGATTCAGGACAAGGAGGGAATCCCCCCGGACCAGCAGCGACTCAT 2007734 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || ||| || || ||||| || || | || |||||| |||||||||||| |||||||| Sbjct 2007733 CTTCGCTGGAAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATTCAGAAGGA 2007674 Query 40881 GGCCACGCTGCATCTAGT 40898 | |||| || ||||| || Sbjct 2007673 GTCCACTCTCCATCTGGT 2007656 Score = 116 bits (128), Expect = 4e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || || ||||| | || || || || || Sbjct 2006757 ATGCAGATCTTTGTCAAGACTCTGACTGGAAAGACTATCACTCTTGAGGTTGAGTCCTCC 2006698 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | ||||| ||||| |||||| ||||||| Sbjct 2006697 GACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 2006639 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| ||| || || ||||| || |||| || ||||| ||||| || Sbjct 2006638 GCAGCGACTTATCTTCGCCGGTAAGCAGCTTGAGGACGGACGAACCCTTTCTGACTATAA 2006579 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| |||| || || || ||| Sbjct 2006578 CATCCAGAAGGAATCCACTCTCCACCTTGTG 2006548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219077635440