Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016-
03-01] 19 sequences; 21,758,297 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq2 138 1e-27
seq1 120 3e-22
>seq2
Length=4150472
Score = 138 bits (152), Expect = 1e-27
Identities = 161/215 (75%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| || | ||| | ||| |||||| || || ||||| |||| ||||| || ||
Sbjct 3374821 CGCAGAACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTTCGGCCG 3374880
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || |||||||| || ||||| ||||||||||||||||| | || | || |||||||
Sbjct 3374881 TCCTCGAGCTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 3374940
Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
||| ||| || |||| ||| | | | |||||| || ||||| |||| |||||
Sbjct 3374941 TCCTGGATCTTGGACTTGA-CGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGAT 3374999
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 43182
||| ||||| || || ||||| |||||||||||||
Sbjct 3375000 GGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 3375034
Score = 111 bits (122), Expect = 2e-19
Identities = 157/218 (72%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| || | ||| | ||| |||||| || || ||||| |||| || || || ||
Sbjct 3070605 CGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCG 3070546
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || ||||||||||| ||||| || |||||||||||||| | || | | |||||||
Sbjct 3070545 TCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTG 3070486
Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
||| ||| || |||| ||| | | | |||||| || ||||| || | |||||
Sbjct 3070485 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 3070427
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 43185
|| || || || || ||||| ||||| || |||||||
Sbjct 3070426 AGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 3070389
>seq1
Length=4845111
Score = 120 bits (132), Expect = 3e-22
Identities = 146/194 (75%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || |||||||||| |||||| || | || || ||||||||||| |||||
Sbjct 2006989 CTCCTTCTGGATGTTGTAATCAGACAGAGTTCGTCCATCCTCAAGCTGCTTACCGGCGAA 2007048
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110
|| |||||||||||||| | || | | |||||||||| ||| | || | |||| ||
Sbjct 2007049 GATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC-TGAATCTTAGACTTGA-CG 2007106
Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169
| | | | ||||| || || || |||| |||||||| || || || || |||||
Sbjct 2007107 TTGTCAATGGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTTCCAGTCAGAGTCTTG 2007166
Query 43170 ACAAAGATTTGCAT 43183
|||||||| |||||
Sbjct 2007167 ACAAAGATCTGCAT 2007180
Score = 114 bits (126), Expect = 1e-20
Identities = 145/194 (75%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| |||| |||||| || |||| || |||||||| ||||||||
Sbjct 2007445 CTCCTTCTGGATGTTGTAGTCAGACAGAGTTCGTCCGTCCTCAAGCTGCTTTCCAGCGAA 2007504
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110
||||||||||||||||| | || | | |||||||||| ||| | || | |||| ||
Sbjct 2007505 AATGAGTCGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCC-TGAATCTTGGACTTGA-CG 2007562
Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169
| | | | ||||| || || || || | ||||| || ||||| || || |||||
Sbjct 2007563 TTGTCAATGGTGTCAGAAGACTCGACCTCAAGGGTGATAGTCTTGCCGGTCAGGGTCTTG 2007622
Query 43170 ACAAAGATTTGCAT 43183
|| ||||| |||||
Sbjct 2007623 ACGAAGATCTGCAT 2007636
Score = 102 bits (112), Expect = 9e-17
Identities = 140/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | |||||| || | || || |||||||||||||||||
Sbjct 2007217 CTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGTCCATCTTCGAGCTGCTTACCAGCGAA 2007276
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110
||||||||||||||||| | || | | |||||||||| ||| | || | ||||
Sbjct 2007277 AATGAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC-TGAATCTTGGACTTGACAT 2007335
Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | |||||| || || || || | || ||||| || || || || ||||| |
Sbjct 2007336 TGTCAATGGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTTCCAGTGAGGGTCTTCA 2007395
Query 43171 CAAAGATTTGCAT 43183
| || || |||||
Sbjct 2007396 CGAAAATCTGCAT 2007408
Score = 100 bits (110), Expect = 3e-16
Identities = 139/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| || || || || |||| || || || |||| || ||||||||||| |||||
Sbjct 2006567 TCCTTCTGGATGTTATAGTCAGAAAGGGTTCGTCCGTCCTCAAGCTGCTTACCGGCGAAG 2006626
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112
|| |||||||||||||| | || | | |||||||||| ||| || |||| |||
Sbjct 2006627 ATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGTT 2006685
Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | | |||||| || || || || | ||||| || || || || || ||||| ||
Sbjct 2006686 GTCAATGGTGTCGGAGGACTCAACCTCAAGAGTGATAGTCTTTCCAGTCAGAGTCTTGAC 2006745
Query 43172 AAAGATTTGCAT 43183
|||||| |||||
Sbjct 2006746 AAAGATCTGCAT 2006757
Score = 86.0 bits (94), Expect = 7e-12
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034
|||| ||| | ||| |||||| ||||| ||||| || | || || || | || ||
Sbjct 2007656 ACCAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCA 2007715
Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 43091
|||||||| |||||||| ||||||||||||||||| | || | | ||||||||||
Sbjct 2007716 AGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCC 2007772
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571817464193320
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