Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016-
03-01] 19 sequences; 21,758,297 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq1 109 1e-18
seq2 86.0 1e-11
seq6 84.2 5e-11
>seq1
Length=4845111
Score = 109 bits (120), Expect = 1e-18
Identities = 268/401 (67%), Gaps = 24/401 (6%)
Strand=Plus/Minus
Query 253999 ACCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGG 254058
|||| || ||| |||| || ||||||||||||| || || |||||||| ||| | || |
Sbjct 2912280 ACCTGCCACATATGCTGTTTTACGGTCCTCCCGGTACCGGTAAGACGTCCACCGTGCTCG 2912221
Query 254059 CGCTGGCCCGAACCCTGT-TGGGCGAGGGGAAC--ATGAGAGAGCGCGTGCTCGAGCTGA 254115
| || ||| | |||| ||||| | ||| |||| || || || || ||||| |
Sbjct 2912220 CTCTTGCCAAAGAGCTGTATGGGCCTG---AACTAATGAAGGATCGAGTTCTGGAGCTCA 2912164
Query 254116 ACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGA-CTTT-CTCCA- 254172
|||| || || || || || | | | | || | |||| ||||||| |||| | ||
Sbjct 2912163 ACGCGTCCGATGAGCGAGGAATCGCCATTGTGAGAGACAGCATCAAGAACTTTGCGGCAC 2912104
Query 254173 AGATGTCGATTTCGTCGTTCCAACCCG--GC-------------TGTCCGCCTTTCAAGC 254217
| | | | || || | | | || || |||||||| ||||||
Sbjct 2912103 AAAAGGTGGTTGCGCCAAAAGACCACGTGGCCGAAAAGTACCCTTGTCCGCCGTTCAAGA 2912044
Query 254218 TCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAA 254277
|| | || ||||| ||||| ||| | |||||| | || || ||| |||||| | ||||
Sbjct 2912043 TCATTATTCTGGATGAGGCCGACTCTATGACGACTGATGCCCAGAGTGCCCTCAGACGAA 2911984
Query 254278 CGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGA 254337
| |||||||| |||| | ||| || || || || | |||||||||||| | |
Sbjct 2911983 CCATGGAGACCTACTCGGCCCAGACTCGATTCTGTCTCATTTGCAACTACGTGACACGTA 2911924
Query 254338 TCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTC 254378
|||| | ||||||||| ||||| || | || || || |||
Sbjct 2911923 TCATTGACCCGCTGGCGTCTCGATGTTCGAAATTCCGGTTC 2911883
>seq2
Length=4150472
Score = 86.0 bits (94), Expect = 1e-11
Identities = 143/207 (69%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 249864 GTCCAACATGAAGCACCGTCCATGTGGGCTGGGCGTTCAGGCACTGCACGACGTCTACAT 249923
|||||||||| ||||| || | ||||| || |||| ||| || || |||
Sbjct 325561 GTCCAACATGCGACACCGACCCATCGCTCTGGGTGTCCAGGGTCTGGCTGATACCTTCAT 325620
Query 249924 GGTGATGGGATTCCCCTTCGAGTCAGAGGAGGCAGCGACGCTAAATAAACAGATTTTCGA 249983
|| || | ||||||| ||||| || ||||| || ||| || | ||||| |||||
Sbjct 325621 GGCTCTGCGTCTCCCCTTTGAGTCCGACGAGGCCAAGAAGCTCAACATCCAGATCTTCGA 325680
Query 249984 GACCATCTATCACGGGAGCGTCGAGGCGTCCATCGAAAGGGCCAAGATCGACGGACCATA 250043
||||||||| ||||| ||||||||| || || || | ||||| || || | ||
Sbjct 325681 GACCATCTACCACGGAGCCGTCGAGGCCTCTATGGAGATGGCCATTGAGGAGGGTGCCTA 325740
Query 250044 CGAGAGTTTTCAGGGGTCGCCCGCGTC 250070
||||| || ||||| || || || ||
Sbjct 325741 CGAGACCTTCCAGGGCTCTCCTGCCTC 325767
>seq6
Length=2655350
Score = 84.2 bits (92), Expect = 5e-11
Identities = 131/185 (71%), Gaps = 2/185 (1%)
Strand=Plus/Minus
Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303
|| |||| ||| ||| || | ||||| ||||| || |||||||||||||| |||
Sbjct 575209 ACACCGGCCTTCTGGTAGTCAGACACTCGCTTCTCGAAGAAGTTGGTCTTTCCAGCCAGA 575150
Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGC 157363
||||| | ||||| | || || ||||||| | ||||||| |||||| || || ||
Sbjct 575149 GAAATGTTCTCCATGAAGTCAAAGGGGTTGGTGGAGTTGTAGACCTTGGGGTTTCCAAG- 575091
Query 157364 TGGTTCAGCCAG-TAGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGAT 157422
| || ||| ||| |||||||||| ||||||| | |||| ||| || | ||
Sbjct 575090 AGCAACAAGCAGACGGTCGGCCACAAACTCAATGTACTGTCGCATGAGCTTGGCGTTCAT 575031
Query 157423 ACCGA 157427
|||||
Sbjct 575030 ACCGA 575026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073766138604992
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |