Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1 109 1e-18 seq2 86.0 1e-11 seq6 84.2 5e-11 >seq1 Length=4845111 Score = 109 bits (120), Expect = 1e-18 Identities = 268/401 (67%), Gaps = 24/401 (6%) Strand=Plus/Minus Query 253999 ACCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGG 254058 |||| || ||| |||| || ||||||||||||| || || |||||||| ||| | || | Sbjct 2912280 ACCTGCCACATATGCTGTTTTACGGTCCTCCCGGTACCGGTAAGACGTCCACCGTGCTCG 2912221 Query 254059 CGCTGGCCCGAACCCTGT-TGGGCGAGGGGAAC--ATGAGAGAGCGCGTGCTCGAGCTGA 254115 | || ||| | |||| ||||| | ||| |||| || || || || ||||| | Sbjct 2912220 CTCTTGCCAAAGAGCTGTATGGGCCTG---AACTAATGAAGGATCGAGTTCTGGAGCTCA 2912164 Query 254116 ACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGA-CTTT-CTCCA- 254172 |||| || || || || || | | | | || | |||| ||||||| |||| | || Sbjct 2912163 ACGCGTCCGATGAGCGAGGAATCGCCATTGTGAGAGACAGCATCAAGAACTTTGCGGCAC 2912104 Query 254173 AGATGTCGATTTCGTCGTTCCAACCCG--GC-------------TGTCCGCCTTTCAAGC 254217 | | | | || || | | | || || |||||||| |||||| Sbjct 2912103 AAAAGGTGGTTGCGCCAAAAGACCACGTGGCCGAAAAGTACCCTTGTCCGCCGTTCAAGA 2912044 Query 254218 TCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAA 254277 || | || ||||| ||||| ||| | |||||| | || || ||| |||||| | |||| Sbjct 2912043 TCATTATTCTGGATGAGGCCGACTCTATGACGACTGATGCCCAGAGTGCCCTCAGACGAA 2911984 Query 254278 CGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGA 254337 | |||||||| |||| | ||| || || || || | |||||||||||| | | Sbjct 2911983 CCATGGAGACCTACTCGGCCCAGACTCGATTCTGTCTCATTTGCAACTACGTGACACGTA 2911924 Query 254338 TCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTC 254378 |||| | ||||||||| ||||| || | || || || ||| Sbjct 2911923 TCATTGACCCGCTGGCGTCTCGATGTTCGAAATTCCGGTTC 2911883 >seq2 Length=4150472 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 249864 GTCCAACATGAAGCACCGTCCATGTGGGCTGGGCGTTCAGGCACTGCACGACGTCTACAT 249923 |||||||||| ||||| || | ||||| || |||| ||| || || ||| Sbjct 325561 GTCCAACATGCGACACCGACCCATCGCTCTGGGTGTCCAGGGTCTGGCTGATACCTTCAT 325620 Query 249924 GGTGATGGGATTCCCCTTCGAGTCAGAGGAGGCAGCGACGCTAAATAAACAGATTTTCGA 249983 || || | ||||||| ||||| || ||||| || ||| || | ||||| ||||| Sbjct 325621 GGCTCTGCGTCTCCCCTTTGAGTCCGACGAGGCCAAGAAGCTCAACATCCAGATCTTCGA 325680 Query 249984 GACCATCTATCACGGGAGCGTCGAGGCGTCCATCGAAAGGGCCAAGATCGACGGACCATA 250043 ||||||||| ||||| ||||||||| || || || | ||||| || || | || Sbjct 325681 GACCATCTACCACGGAGCCGTCGAGGCCTCTATGGAGATGGCCATTGAGGAGGGTGCCTA 325740 Query 250044 CGAGAGTTTTCAGGGGTCGCCCGCGTC 250070 ||||| || ||||| || || || || Sbjct 325741 CGAGACCTTCCAGGGCTCTCCTGCCTC 325767 >seq6 Length=2655350 Score = 84.2 bits (92), Expect = 5e-11 Identities = 131/185 (71%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || |||| ||| ||| || | ||||| ||||| || |||||||||||||| ||| Sbjct 575209 ACACCGGCCTTCTGGTAGTCAGACACTCGCTTCTCGAAGAAGTTGGTCTTTCCAGCCAGA 575150 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGC 157363 ||||| | ||||| | || || ||||||| | ||||||| |||||| || || || Sbjct 575149 GAAATGTTCTCCATGAAGTCAAAGGGGTTGGTGGAGTTGTAGACCTTGGGGTTTCCAAG- 575091 Query 157364 TGGTTCAGCCAG-TAGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGAT 157422 | || ||| ||| |||||||||| ||||||| | |||| ||| || | || Sbjct 575090 AGCAACAAGCAGACGGTCGGCCACAAACTCAATGTACTGTCGCATGAGCTTGGCGTTCAT 575031 Query 157423 ACCGA 157427 ||||| Sbjct 575030 ACCGA 575026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766138604992