Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016-
03-01] 19 sequences; 21,758,297 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq1 102 6e-17
seq2 100 2e-16
>seq1
Length=4845111
Score = 102 bits (112), Expect = 6e-17
Identities = 148/208 (71%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188
|||| || || ||| ||||||||| ||||||||||| ||| || |||| || |
Sbjct 2007429 CAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTTCGTCCGTCCTCAA 2007488
Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248
| || ||||| ||||| || | ||||| ||||| || || | |||||||||||| ||
Sbjct 2007489 GCTGCTTTCCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGAA 2007548
Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308
| || ||| || | | | |||| | ||| ||||| | ||| || |||||||
Sbjct 2007549 TCTTGGACTTGACGTTGTCAATGGTGTCAGAAGACTCGACCTCAAGGGTGATAGTCTTGC 2007608
Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336
| ||||| ||||| || ||||| |||||
Sbjct 2007609 CGGTCAGGGTCTTGACGAAGATCTGCAT 2007636
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193
|| || ||| ||||||||| |||||||| || ||| || | || || || ||
Sbjct 2006978 TGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAGAGTTCGTCCATCCTCAAGCTGC 2007037
Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253
|| |||||||| || | ||||| ||||| || || | |||||||||||| ||| ||
Sbjct 2007038 TTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAATCTTA 2007097
Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313
||| || | | | |||| | ||| ||||| | ||| || ||||| || |||
Sbjct 2007098 GACTTGACGTTGTCAATGGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTTCCAGTC 2007157
Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336
|||||||| |||||||| |||||
Sbjct 2007158 AGAGTCTTGACAAAGATCTGCAT 2007180
Score = 86.0 bits (94), Expect = 5e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| |||||||||||| ||| || | || || || || || || |||||
Sbjct 2007217 CTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGTCCATCTTCGAGCTGCTTACCAGCGAA 2007276
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
|| | ||||| ||||| || || | |||||||||||| ||| || ||| ||
Sbjct 2007277 AATGAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACATT 2007336
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | | |||| ||| ||||| | |||||| ||||| || || || ||||||||
Sbjct 2007337 GTCAATGGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTTCCAGTGAGGGTCTTCAC 2007396
Query 45325 AAAGATTTGCAT 45336
|| || |||||
Sbjct 2007397 GAAAATCTGCAT 2007408
>seq2
Length=4150472
Score = 100 bits (110), Expect = 2e-16
Identities = 147/207 (71%), Gaps = 1/207 (0%)
Strand=Plus/Plus
Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188
|||| || || ||| ||||||||| ||||||||||| || || |||| || |
Sbjct 3374828 CAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTTCGGCCGTCCTCGA 3374887
Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248
| || || |||||||| || | ||||| ||||| || || | |||||||||||| |
Sbjct 3374888 GCTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGA 3374947
Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308
| || ||| || | | | |||| | ||||||||| | ||| || |||||||
Sbjct 3374948 TCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGC 3375007
Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCA 45335
| || || ||||| |||||||||||||
Sbjct 3375008 CAGTAAGGGTCTTGACAAAGATTTGCA 3375034
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193
|| || ||| ||||||||| ||||||||||| || || |||| || || ||
Sbjct 3070593 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCGTCCTCGAGCTGC 3070534
Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253
|| |||||||| || | ||||| ||||| || || | |||||||||||| || ||
Sbjct 3070533 TTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTG 3070474
Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313
||| || | | | |||| | ||||||||| | ||| || ||||| || ||
Sbjct 3070473 GACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCGGTA 3070414
Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336
|| ||||| ||||| || |||||
Sbjct 3070413 AGGGTCTTGACAAAAATCTGCAT 3070391
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395075108515399
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |