Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq6 205 1e-47 seq5 172 7e-38 >seq6 Length=2655350 Score = 205 bits (226), Expect = 1e-47 Identities = 403/593 (68%), Gaps = 10/593 (2%) Strand=Plus/Minus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 || ||| || || ||| ||| |||||||| |||| | ||| | |||||||| || || Sbjct 574913 CAGACAGGCAAAGTCGGTGTGCAGACCCTCATCTCGAGAAATGAGCTCGTTGGAGAAGGT 574854 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 36273 || || ||||| || || ||||| || ||||| || ||||| ||||| ||||| || || Sbjct 574853 CAGGCCAGGCATGAGACCTCGCTTCTTGAGCCAGAAAATGGAGGCAAAAGATCCGGAGAA 574794 Query 36274 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT----GT 36329 |||||| || || || || |||||||| ||||||| ||| ||| | | ||| || Sbjct 574793 GAAAATACCCTCAACGGCAGCAAAGGCGATAAGTCGCTCGCCAAAGGTAG-ACTCGTCGT 574735 Query 36330 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 36389 | |||||||| ||||||| ||||||||||| || | || || || ||||| || | Sbjct 574734 CGGAGATCCACTTGAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGGTCTCAATGG 574675 Query 36390 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 36449 | || || || || || || || || || | || |||||||| | ||| | Sbjct 574674 CGTTGAACAGGTAAGTTCGCTCCTTGGGGTCCTTGATGTAAGTATCAATGAGCAGAGAGT 574615 Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 36509 | | || ||||| ||||| || || || || ||||||||||| || | ||||| | Sbjct 574614 AGGTCTCGGAATGGATGTTCTCCATCATGATCTGGAATCCGTAGAAGCACTTGGCCTCAG 574555 Query 36510 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 36569 | ||| || ||| | | || || || | | || || || || || |||||| || Sbjct 574554 GAGCCTGAACCTCTCCAGAGAACCGCTCAACCAGGTTCTCGTTGACAATACCGTCAGAGG 574495 Query 36570 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT----AGTTTA 36625 | ||||| || |||| || || || ||| | || ||| | | |||| | || Sbjct 574494 CAGCAAAGAAAGCCAGCACGTGCGAAATGAAAAACTTCTCG-TCGCTGTTGAGCCGGTTC 574436 Query 36626 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 36685 | ||| || ||||| || | ||| | || || | ||||| || || ||||| Sbjct 574435 TCCCAGTCGCCCATATCCTTGCCGAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCG 574376 Query 36686 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 ||||| || ||||| | ||| || ||||| || ||||| || || | ||||| Sbjct 574375 GCCTTCTTGTACATCTGCCAAATCTCATGGTACTGAATAGGGAAGAGCACAAA 574323 >seq5 Length=2743614 Score = 172 bits (190), Expect = 7e-38 Identities = 624/952 (66%), Gaps = 36/952 (4%) Strand=Plus/Minus Query 65736 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 65795 || ||||| |||||||||||||| || || || | || | || ||||| || |||||| Sbjct 1439864 GCCACAGAAGCCAGATTACAAACAGCAACTTCTTCAGGAGACGAGTATTGAATAATCTCA 1439805 Query 65796 GTGCAAAGATTACTAC-ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 65854 || || | ||| | || | ||||| || || | ||| || || || || |||||| Sbjct 1439804 GTACACAAATT-CGACGATTTGATCGTACCGAGATTCTGCTGGTTGGATTTCGCGTTACA 1439746 Query 65855 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 65914 || ||||| || ||||| ||| || ||||| || ||| | |||||| || Sbjct 1439745 GCTGTCTTTATACAGCATGAACGGACCTCCTGTTTCGATTTGACTCGTGAGAATCGCCTT 1439686 Query 65915 CCAGACGACTCGAGCCTTTATTATAGATTTGTAT---CTCTT-TTCTCTTTCGTATAGTG 65970 | | | |||| || ||| ||| ||||| | ||| ||||| | | || || Sbjct 1439685 GAACAGCTCCTGAGCGTTGATTTGAGAATTGTACAGCCCCTTCTTCTCATACTCATTGT- 1439627 Query 65971 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA- 66029 |||| | ||||| ||||||||||| |||| ||| ||| ||| | | || || Sbjct 1439626 ---ACAACCTCTCGAAATCGTCTCCCCAGACATCAGCCAGTCCTGGAGCT-CTTCTGGGG 1439571 Query 66030 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 66089 || | | |||||| | | || | | | ||| ||||||||| | |||||| | ||| Sbjct 1439570 CAGAAAAGCGACCATTTTTCGCCGTTTTCGACTTTTTTCATAAACAAATCAGGCACCCAG 1439511 Query 66090 AGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATC 66148 ||||| ||| || | || | | ||| | |||||| || ||| ||| | || Sbjct 1439510 AGAGC-ATAGAACAGGTCACGTGCTCTGTTTTCCTCTGCGCCATGATTTTTTCGCAAATT 1439452 Query 66149 GAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 66208 || || ||| |||||| |||||| || ||||| || | || | ||||||| || Sbjct 1439451 CAGAAAATCCAAAATATCCGCATGCCAAGGCTCCAAATACACTGCAAACGCTCCAGGTCG 1439392 Query 66209 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 66268 ||||||||| || ||||| | ||| | ||||| || || | ||||| | ||| |||| Sbjct 1439391 TTTGTTTCCCCCTTGATCAACGTACCGTGCGGTATTGTTGAACACTCTGAGCATGGGAAC 1439332 Query 66269 AATACCATTGGATGTACCATTGGTCCCGGAGAT-ATAGCTTCCACTTGCACGAATATTAC 66327 ||||| || || | | || | || | ||| ||| | || | || || Sbjct 1439331 GATACCTGAAGACCGTCCTTGAGAACCTGTAATGAGAGC-TCCTTTGGCTCTGATGTTGT 1439273 Query 66328 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT-AACGTA 66386 ||| |||||||| || ||||| |||| || || || || |||||| | ||| Sbjct 1439272 GAATATGCAGACCTATACCTCCTGCTGTTTTGGAAATCTGAGCACA-CGTTTTGAGCGTG 1439214 Query 66387 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 66446 || |||||||| || || || | |||| || ||||||||| ||| | Sbjct 1439213 TCGTAGATGCCGTCAATGGAGTCTGCTGCCATGGCAACGAGAAAACAG---GACGAAAGC 1439157 Query 66447 TGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 66503 |||| || ||| || ||||| || |||||||||||||| || || ||| ||| | | Sbjct 1439156 TGACCCTGAGGAGTACCTGCATTGAACAAGGTAGGAGAAGCATGAGTGAAC--TTTCTGA 1439099 Query 66504 G----AAAGTAGATTGTACGTCTC-AATAGCTGAGTCTATATCCCATTGATGAATTCCTA 66558 | |||| ||| |||||| || | | || || |||| | || || ||| Sbjct 1439098 GAGATAAAGCAGA--GTACGTTTCGAGCACCTTGGT-GGTATCGTCTCCGTGGATGGCTA 1439042 Query 66559 CTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT-TGTTTATTTTCAAC 66617 || || ||||| | ||| || ||||||||||| || | || || | ||| |||| Sbjct 1439041 GTGATACTCGCATGAGCATCTGTTGAGGTCTTTCCACTA-CTCGTCCCTGGATTCTCAAA 1438983 Query 66618 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 66669 | ||| ||||||||||| || || || ||||| ||| ||| | | ||||| Sbjct 1438982 AGGTACGATTTTTCCAACGTCTTGAATCCAAAGTAGGAGTAAGTGAGGTCTC 1438931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172643683960