Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6 210 3e-49 seq5 159 5e-34 >seq6 Length=2655350 Score = 210 bits (232), Expect = 3e-49 Identities = 403/592 (68%), Gaps = 8/592 (1%) Strand=Plus/Minus Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 || ||| || || ||| |||||||||||| |||| | ||| || |||||||| || || Sbjct 574913 CAGACAGGCAAAGTCGGTGTGCAGACCCTCATCTCGAGAAATGAGCTCGTTGGAGAAGGT 574854 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAA 50075 || || ||||| || || ||||| || ||||| || ||||| ||||| || || || || Sbjct 574853 CAGGCCAGGCATGAGACCTCGCTTCTTGAGCCAGAAAATGGAGGCAAAAGATCCGGAGAA 574794 Query 50076 GAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTC 50132 ||| || || || || || |||||||| | ||||| ||| ||| | | | || ||| Sbjct 574793 GAAAATACCCTCAACGGCAGCAAAGGCGATAAGTCGCTCGCCAAAGGTAGACTCGTCGTC 574734 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 |||||||| ||||||| ||||||||||| || | || || || || || ||||| Sbjct 574733 GGAGATCCACTTGAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGGTCTCAATGGC 574674 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 || || || || || || || || || | |||||||| || | ||| || Sbjct 574673 GTTGAACAGGTAAGTTCGCTCCTTGGGGTCCTTGATGTAAGTATCAATGAGCAGAGAGTA 574614 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 | || ||||| ||||| || || ||||| ||||||||||| || | ||||| | Sbjct 574613 GGTCTCGGAATGGATGTTCTCCATCATGATCTGGAATCCGTAGAAGCACTTGGCCTCAGG 574554 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 | ||| || ||| | | || || ||| | | || || || || || |||||| ||| Sbjct 574553 AGCCTGAACCTCTCCAGAGAACCGCTCAACCAGGTTCTCGTTGACAATACCGTCAGAGGC 574494 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT----AGTTTAT 50428 ||||| || |||| || || || ||| || ||| | | |||| | || | Sbjct 574493 AGCAAAGAAAGCCAGCACGTGCGAAATGAAAAACTTCTCG-TCGCTGTTGAGCCGGTTCT 574435 Query 50429 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 50488 ||| || ||||| || | ||| | || || | ||||| || || ||||| | Sbjct 574434 CCCAGTCGCCCATATCCTTGCCGAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGG 574375 Query 50489 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 |||| || ||||| | ||| || ||||| || || || ||||| | ||||| Sbjct 574374 CCTTCTTGTACATCTGCCAAATCTCATGGTACTGAATAGGGAAGAGCACAAA 574323 >seq5 Length=2743614 Score = 159 bits (176), Expect = 5e-34 Identities = 624/955 (65%), Gaps = 42/955 (4%) Strand=Plus/Minus Query 79615 GCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCA 79674 || ||||| |||||||||||||| || || || | || | || ||||| || || ||| Sbjct 1439864 GCCACAGAAGCCAGATTACAAACAGCAACTTCTTCAGGAGACGAGTATTGAATAATCTCA 1439805 Query 79675 GTGCAGAGGTTACTAC-ACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 79733 || || | || | || | || || || || | ||| || || || || |||||| Sbjct 1439804 GTACACAAATT-CGACGATTTGATCGTACCGAGATTCTGCTGGTTGGATTTCGCGTTACA 1439746 Query 79734 CGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 79793 || ||||| || ||||||||| || ||||| || ||| | |||||| || Sbjct 1439745 GCTGTCTTTATACAGCATGAACGGACCTCCTGTTTCGATTTGACTCGTGAGAATCGCCTT 1439686 Query 79794 CCAGACGACTCGAGCCTTTATTATAGACTTGTAT---CTCTT-TTCTCTTTCGTATTGTG 79849 | | | |||| || ||| ||| ||||| | ||| ||||| | | ||||| Sbjct 1439685 GAACAGCTCCTGAGCGTTGATTTGAGAATTGTACAGCCCCTTCTTCTCATACTCATTGT- 1439627 Query 79850 TATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGA- 79908 | || | ||||| ||||||||||| ||||| | | ||| ||| | | || || Sbjct 1439626 ---ACAACCTCTCGAAATCGTCTCCCCAGACATCAGCCAGTCCTGGAGCT-CTTCTGGGG 1439571 Query 79909 CACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAA 79968 || | | |||||| | | | | | | ||| ||||||||| | |||||| | ||| Sbjct 1439570 CAGAAAAGCGACCATTTTTCGCCGTTTTCGACTTTTTTCATAAACAAATCAGGCACCCAG 1439511 Query 79969 AGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATC 80027 ||||| ||| || || || | | ||| | ||||| || ||| ||| | || Sbjct 1439510 AGAGC-ATAGAACAGGTCACGTGCTCTGTTTTCCTCTGCGCCATGATTTTTTCGCAAATT 1439452 Query 80028 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCG 80087 || || ||| |||||| | |||||| || ||||| || | || | |||| ||||| Sbjct 1439451 CAGAAAATCCAAAATATCCGCATGCCAAGGCTCCAAATACACTGCAAACGCTCCAGGTCG 1439392 Query 80088 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 80147 ||||||||| || ||||| | ||| | ||||| || || | ||||| | ||| |||| Sbjct 1439391 TTTGTTTCCCCCTTGATCAACGTACCGTGCGGTATTGTTGAACACTCTGAGCATGGGAAC 1439332 Query 80148 AATACCATTGGATGTACCATTGGTCCCGGAGAT-ATAGCTTCCACTGGCACGAATATTAC 80206 ||||| || || | | || | || | ||| ||| |||| | || || Sbjct 1439331 GATACCTGAAGACCGTCCTTGAGAACCTGTAATGAGAGC-TCCTTTGGCTCTGATGTTGT 1439273 Query 80207 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT-AACGTA 80265 ||| |||||||| || ||||| |||| || || || || |||||| | ||| Sbjct 1439272 GAATATGCAGACCTATACCTCCTGCTGTTTTGGAAATCTGAGCACA-CGTTTTGAGCGTG 1439214 Query 80266 TCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGG 80325 || |||||||| || ||| || | |||| || ||||||||| ||| | Sbjct 1439213 TCGTAGATGCCGTCAATGGAGTCTGCTGCCATGGCAACGAGAAAACAG---GACGAAAGC 1439157 Query 80326 TGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 80382 |||| || ||| || ||||| || |||||||||||||| || || ||| ||| | | Sbjct 1439156 TGACCCTGAGGAGTACCTGCATTGAACAAGGTAGGAGAAGCATGAGTGAAC--TTTCTGA 1439099 Query 80383 G----ACAGTAGATTGTACGTCTCAATAGC--TGATTCTAT-ATC-CCATTGATGAATTC 80434 | | || ||| |||||| || | | || | ||| || || | |||| Sbjct 1439098 GAGATAAAGCAGA--GTACGTTTCGAGCACCTTGGTGGTATCGTCTCCGTGGATG----G 1439045 Query 80435 CTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT-TATTTATTTTC 80493 ||| | || ||||| | ||| || ||||||||||| || | || || | ||| || Sbjct 1439044 CTAGTGATACTCGCATGAGCATCTGTTGAGGTCTTTCCACTA-CTCGTCCCTGGATTCTC 1438986 Query 80494 AACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 80548 || | ||| ||||||||||| || || || ||||| ||| ||| | | ||||| Sbjct 1438985 AAAAGGTACGATTTTTCCAACGTCTTGAATCCAAAGTAGGAGTAAGTGAGGTCTC 1438931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268629411160