Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6 260 2e-64 seq2 125 1e-23 seq5 100 4e-16 >seq6 Length=2655350 Score = 260 bits (288), Expect = 2e-64 Identities = 585/866 (68%), Gaps = 47/866 (5%) Strand=Plus/Plus Query 125009 GTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGA 125068 ||| ||||| |||||| | |||||||| ||||| |||| || || ||||| | ||| || Sbjct 574343 GTACCATGAGATTTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGA 574402 Query 125069 GGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGA 125128 | | ||||| |||||| || ||| ||||||| || | | | | || ||||| Sbjct 574403 GATTGATCTCGGCAAGGATATGGGCGACTGGGAGAACCGGCTCA---ACAGCGA-CGAGA 574458 Query 125129 -GTTT---ATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACA 125184 |||| || |||||| | |||| |||||||| | ||| || || || |||||||| | Sbjct 574459 AGTTTTTCATTTCGCACGTGCTGGCTTTCTTTGCTGCCTCTGACGGTATTGTCAACGAGA 574518 Query 125185 ATCTG-TTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGA 125243 | ||| |||| || |||||| |||| | ||| |||| |||||| |||||| Sbjct 574519 ACCTGGTTGAG-CGGTTCTCTGGAGAGGTTCAGGCTCCTGAGGCCAAGTGCTTCTACGGA 574577 Query 125244 TTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTAC 125303 ||||| |||||||| |||||| | || || || | |||||| || ||||| | ||| Sbjct 574578 TTCCAGATCATGATGGAGAACATCCATTCCGAGACCTACTCTCTGCTCATTGATACTTAC 574637 Query 125304 ATTCGCGATCCGCAACGTAAACACAT-GCTCTTTAACGCAATCGACACGGTGCCGTCTAT 125362 | || | || ||| | || | || || ||||| || || || | || | || Sbjct 574638 A-TCAAGGACCCCAAGGAGCGAACTTACCTGTTCAACGCCATTGAGACCATTCCCTGCAT 574696 Query 125363 ACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGA 125422 || ||||| | |||| | ||||||| |||||| ||||| | | | ||| Sbjct 574697 CAAGAAGAAGGCCGACTGGGCTCTCAAGTGGATCTCCGACGACGAGTCTACCTTTGGCGA 574756 Query 125423 CAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCAT 125482 |||| | || || || ||||| ||||| || ||||| || || |||||| |||| Sbjct 574757 GCGACTTATCGCCTTTGCTGCCGTTGAGGGTATTTTCTTCTCCGGATCTTTTGCCTCCAT 574816 Query 125483 CTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATC 125542 || |||||||||||||| || |||||||| || ||||| | |||||| | || || Sbjct 574817 TTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATTTC 574876 Query 125543 TCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTC 125601 |||||| ||||| || ||| ||||||||| ||| || || || || || Sbjct 574877 TCGAGATGAGGGTCTGCACACCGACTTTGCCTGTCTGCTCTTCTCTCACCT--------- 574927 Query 125602 CCGAGTGCAGATCCAGCGATGAAAAGGTC---ATCAACATTGTAACCGATGCCGTGAGGA 125658 |||| | || || | | | | ||| | |||||| ||| || || | | Sbjct 574928 -CGAGAACCGACCCTCCAAGAAGATTGTCGAGGACGTCATTGT---CGAGGCTGTTGGCA 574983 Query 125659 TAGAACAAGAGTTTCTAACCGA----ATCCCTACCGGTCAGCATGATTGGCATGAACTGC 125714 | || || ||||| || || || ||||| |||| || | || |||||| | Sbjct 574984 TTGAGCAGGAGTTCCTTACTGATGCTCTCCCTTGTGGTC----TGCTCGGTATGAACGCC 575039 Query 125715 AAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTG 125772 ||||| ||| | ||||||| ||||||||||| || ||||| || |||| ||| Sbjct 575040 AAGCTCATGCGACAGTACATTGAGTTTGTGGCCGACCGTCTGCT-----TGTTGCTCTTG 575094 Query 125773 G---CCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAG 125829 | || |||| | |||||| ||| || |||||||| |||||| | ||| || || | Sbjct 575095 GAAACCCCAAGGTCTACAACTCCACCAACCCCTTTGACTTCATGGAGAACATTTCTCTGG 575154 Query 125830 AGGGTAAGACCAACTTTTTCGAGAAG 125855 || ||||||||||| ||||||||| Sbjct 575155 CTGGAAAGACCAACTTCTTCGAGAAG 575180 >seq2 Length=4150472 Score = 125 bits (138), Expect = 1e-23 Identities = 376/571 (66%), Gaps = 12/571 (2%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||| | | ||| || | ||||| |||||| || | ||||| || || | || Sbjct 324866 ACCAACGGTACCTCCAACGGTATCGTGCCCATGCTCCGAGTCTACAACAACACTGCC-CG 324924 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 ||||||| ||||| || || || || || || || | ||| | ||| | || ||||| Sbjct 324925 ATACGTTGACCAGGGTGGTAACAAGCGACCCGGAGCCTTTGCCATGTACCTTGAGCCTTG 324984 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 ||||| ||| | || || || |||| |||| || ||| || || ||| || Sbjct 324985 GCACGACGACATCTTCGAGTTCTGCGAGCTGCGAAAGAACCACGGAAAGGAGGAGATCCG 325044 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 |||| | ||| |||| || || ||| | || || |||||||| |||| ||| | | Sbjct 325045 AGCCCGAGACCTGTTCCTGGCCCTGTGGATTCCCGACCTGTTCATGGAGCGAGTCGAGCA 325104 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 ||| | |||| ||| ||||||||| || || |||||||| ||| || || Sbjct 325105 GAACGGCGAGTGGACCCTCATGTGCCCCAACGAGTGCCCCGGTCTTGACGACGTCTACGG 325164 Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGT 97165 || ||||| || |||| | ||||||| |||||| ||| | ||||| Sbjct 325165 TGACGAGTTCAAGAAGCTGTACGAGCAGTACGAGCGAGAGGGACGAGGCC---GACGAAC 325221 Query 97166 CGATGCACG---AGAA-CTGTGGAAGGCCATCGT-GACGGCTCAGGTAGAGACTGGAACT 97220 | || | || |||| |||||| | ||| | ||| || ||| ||| | |||| Sbjct 325222 C-ATCCCCGCCCAGAAGCTGTGGTACCACATTCTCGACTGC-CAGACCGAGTCCGGAAAC 325279 Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280 || | ||| ||||||||||| || || || || |||||| || |||| ||| Sbjct 325280 CCCTTCATGCTCTACAAGGACTCCTGCAACCGAAAGTCCAACCAGAAGAACCTGGGAACC 325339 Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCA 97340 |||||| ||||| ||||| || ||||| |||||| | ||||| || ||| || Sbjct 325340 ATCAAGTCTTCCAACCTGTGTTGCGAGATTGTCGAGTACTCTTCTCCCGATGAGGTTGCC 325399 Query 97341 GTTTGCGTTCTGGCATCGGTCAATCTGCCCA 97371 || ||| ||||| || | |||||||| Sbjct 325400 GTCTGCAACCTGGCCTCCATTGCTCTGCCCA 325430 >seq5 Length=2743614 Score = 100 bits (110), Expect = 4e-16 Identities = 149/208 (72%), Gaps = 10/208 (5%) Strand=Plus/Plus Query 96831 GTGCCAATGCTCAGAATGTACAATGCAATGTC--ACGATACGTTACACAGGGCGGCAATA 96888 || || ||||||||| ||| ||| |||| | ||| |||||| || || || || | Sbjct 1439332 GTTCCCATGCTCAGAGTGTTCAA--CAATACCGCACGGTACGTTGATCAAGGGGGAAACA 1439389 Query 96889 AACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTA 96948 |||| || || || | || || || ||||| |||||||| ||||| |||| || ||| Sbjct 1439390 AACGACCTGGAGCGTTTGCAGTGTATTTGGAGCCTTGGCATGCGGATATTTTGGATTTTC 1439449 Query 96949 TCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC---GAGCCAGGGACTTGTTTTATG 97005 | | |||| ||||| |||| | ||||| | |||| | ||| |||| |||| Sbjct 1439450 TGAATTTGCGAAAAAATCATGGC---GCAGAGGAAAACAGAGCACGTGACCTGTTCTATG 1439506 Query 97006 CACTCTGGGTGCCAGATTTGTTCATGAA 97033 | ||||||||||| |||||||| ||||| Sbjct 1439507 CTCTCTGGGTGCCTGATTTGTTTATGAA 1439534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059023998440