Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 140 7e-28 seq2 129 1e-24 seq6 102 2e-16 >seq1 Length=4845111 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | ||| || ||||| | ||||| || ||||| || || ||||| Sbjct 2007179 ATACCACCTCGAAGTCGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCG 2007238 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||| || ||||| || || || ||||| ||||| || | ||| || || || Sbjct 2007239 GACAGAGTTCGTCCATCTTCGAGCTGCTTACCAGCGAAAATGAGTCGCTGCTGGTCCGGG 2007298 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || || ||||||||||| | || ||||| || | ||| ||| | || Sbjct 2007299 GGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCG 2007358 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| ||||| ||||| || || || || || |||||||| Sbjct 2007359 ACCTCAAGGGTAATGGTCTTTCCAGTGAGGGTCTTCACGAAAATCTGCAT 2007408 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || ||||| | || || || ||||| || || |||||| Sbjct 2007407 ATACCACCTCGGAGTCGGAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCA 2007466 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||| ||||| || || || |||||||| ||||| || | ||| || || || Sbjct 2007467 GACAGAGTTCGTCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGTCGCTGCTGGTCCGGG 2007526 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || || ||||||||||| | || || || || | ||| || || || Sbjct 2007527 GGGATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGACTCG 2007586 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || |||||||| || || || || || || || |||||||| Sbjct 2007587 ACCTCAAGGGTGATAGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 2007636 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || ||||||||||| || |||| ||||| || || || || || Sbjct 2006561 GTGGATTCCTTCTGGATGTTATAGTCAGAAAGGGTTCGTCCGTCCTCAAGCTGCTTACCG 2006620 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || || || || ||||| ||||| | || Sbjct 2006621 GCGAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 2006680 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||| | || ||||| || || |||||||| ||||| || || Sbjct 2006681 ACGTTGTCAATGGTGTCGGAGGACTCAACCTCAAGAGTGATAGTCTTTCCAGTCAGAGTC 2006740 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 2006741 TTGACAAAGATCTGCAT 2006757 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| || || || ||||| ||||||| || || Sbjct 2006969 AGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAGAGTTCGTCCATCC 2007028 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || || | ||| || || || || ||||| || || ||| Sbjct 2007029 TCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC 2007088 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| | || || || || | ||| || || || ||||| || || || ||| Sbjct 2007089 TGAATCTTAGACTTGACGTTGTCAATGGTGTCAGAAGACTCAACCTCGAGGGTGATGGTC 2007148 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || ||||| |||||||| Sbjct 2007149 TTTCCAGTCAGAGTCTTGACAAAGATCTGCAT 2007180 Score = 87.8 bits (96), Expect = 4e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || ||||| | || || || |||||||| || ||||| Sbjct 2007635 ATACCACCTCGGAGTCGGAGGACCAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCG 2007694 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||| || || || || || |||||||| || || || | ||| || || || Sbjct 2007695 GAGAGGGTTCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGGTCCGGG 2007754 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCG 104500 || ||||| || || ||||||||||| | || || || || | |||||| Sbjct 2007755 GGGATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTATCG 2007805 >seq2 Length=4150472 Score = 129 bits (142), Expect = 1e-24 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| || || |||||||| || |||| ||||| Sbjct 3070602 AGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCGTCC 3070543 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || || | ||| || || || || ||||| || || ||| Sbjct 3070542 TCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC 3070483 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| | || || || || | ||| ||| || || ||||| || || |||||| Sbjct 3070482 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTC 3070423 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTT 104561 ||||| ||||| || || ||||| |||||||||| Sbjct 3070422 TTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 3070389 >seq6 Length=2655350 Score = 102 bits (112), Expect = 2e-16 Identities = 384/593 (65%), Gaps = 16/593 (3%) Strand=Plus/Plus Query 268703 TTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCT 268762 |||||| | || || || ||| | ||| || ||| ||||||||| |||||| ||| Sbjct 574323 TTTGTGCTCTTCCCTATTCAGTACCATGAGATTTGGCAGATGTACAAGAAGGCCGAGGCT 574382 Query 268763 TCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAAT--- 268819 ||||| ||||| | || || | ||||| | || | || ||| | || Sbjct 574383 TCTTTCTGGACCGCCGAGGAGATTGATCTCGGCAAGGATATGGGCGACTGGGAGAACCGG 574442 Query 268820 -TTAAAACCAGAAGAAAGAAGATTT--ATATCTTATATTCTTGCGTTTTTTGCAGTTAGT 268876 | || | | || || |||| ||| || || | | || || || ||||| | | Sbjct 574443 CTCAACAGC-GACGA--GAAGTTTTTCATTTCGCACGTGCTGGCTTTCTTTGCTGCCTCT 574499 Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 || ||||| || ||||| || || || ||| ||||| | |||||| ||| |||||| Sbjct 574500 GACGGTATTGTCAACGAGAACCTGGTTGAGCGGTTCTCTGGAGAGGTTCAGGCTCCTGAG 574559 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 |||| || || |||||||||||||| || || || || ||||| |||| ||| | Sbjct 574560 GCCAAGTGCTTCTACGGATTCCAGATCATGATGGAGAACATCCATTCCGAGACCTACTCT 574619 Query 268997 CTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGA-CTATT-TTCTTCTA 269054 || | || |||||||| || | || ||| | | ||| | || || | | Sbjct 574620 CTGCTCATTGATACTTACATCAAGGACCCCAA-GGAGCGAACTTACCTGTTCAACGCCAT 574678 Query 269055 TGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATA 269114 |||| || || ||| | | || || | || |||||||| || ||||| ||| Sbjct 574679 TGAG-ACCATTCCCTGCATCAAGAAGAAGGCCGACTGGGCTCTCAAGTGGATCTCCGACG 574737 Query 269115 GCGCGCCT---TACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTT 269171 || | || | || || | | | || ||||| || || || ||||| ||||| | Sbjct 574738 ACGAGTCTACCTTTGGCGAGCGACTTATCGCCTTTGCTGCCGTTGAGGGTATTTTCTTCT 574797 Query 269172 CGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTT 269231 | || ||||||||| | || || ||| | ||||| |||| || ||||| || | || | Sbjct 574798 CCGGATCTTTTGCCTCCATTTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGCCTGACCT 574857 Query 269232 TCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGT 269284 |||| ||||| | || | || || ||| | ||| |||||| || ||| Sbjct 574858 TCTCCAACGAGCTCATTTCTCGAGATGAGGGTCTGCACACCGACTTTGCCTGT 574910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398119706452