Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2 163 4e-36 seq4 120 5e-23 >seq2 Length=4150472 Score = 163 bits (180), Expect = 4e-36 Identities = 208/284 (73%), Gaps = 2/284 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || || | ||| | | ||||||||||| || |||||||||||||| |||| Sbjct 1314982 CGCTAAGCGACACCGAAAGATTT-TGCGAGATAACATTCAGGGAATCACCAAGCCCGCTA 1315040 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || || || ||||| |||||||| | || | | |||| || |||| Sbjct 1315041 TCCGACGTCTTGCGCGACGAGGTGGTGTCAAGCGAATTTCCGCCCAGATCTACGAGGAGA 1315100 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| ||||||| || |||| || | ||||| || || |||| Sbjct 1315101 CCCGAAACGTTCTGAAGTCCTTCCTCGAGTCCGTCATTCGAGATGCCGTCACTTACACCG 1315160 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||||||||| || | ||| | ||||| || | || || || | Sbjct 1315161 AGCACGCCAAGCGAAAGACTGTCACTTCTCTCGATGTTGTCTACGCCCTCAAGCGACAGG 1315220 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATCAAACT 16714 |||| | |||| ||||| || ||||| || || || |||| Sbjct 1315221 GCCGAACCCTTTACGGTTTCGGTGGTTAAGCTGCTTGTCTAACT 1315264 >seq4 Length=2864709 Score = 120 bits (132), Expect = 5e-23 Identities = 190/270 (70%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || || | ||| |||||||||||||||||| || ||||||||||| || | Sbjct 154747 CGCTAAGCGACACCGAAAGAT-TCTTCGAGATAACATCCAGGGTATCACCAAGCCCGCCA 154689 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| || || || || || |||||||| | || | | | || || |||| Sbjct 154688 TTCGACGTCTTGCACGACGAGGAGGTGTCAAGCGAATTTCCGCCCAGATTTACGAGGAGA 154629 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| ||||| || | || || | || || | ||| || | Sbjct 154628 CCCGAAACGTGCTCAAGTCGTTCCTGGAGTCTGTCATTCGAGACGCCGTGACCTACACTG 154569 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||||| |||| | ||||| || | || || || | Sbjct 154568 AGCACGCCAAGCGAAAGACCGTCACCTCTCTGGACGTGGTCTACGCCCTCAAGCGACAGG 154509 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | | || ||||| ||| |||||| Sbjct 154508 GCCGAACCCTCTACGGTTTCGGAGGTTAAT 154479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075182628167