Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq6 219 5e-52 seq5 196 6e-45 >seq6 Length=2655350 Score = 219 bits (242), Expect = 5e-52 Identities = 405/592 (68%), Gaps = 8/592 (1%) Strand=Plus/Minus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 || ||| || || ||| |||||||||||| |||| | ||| || |||||||| || || Sbjct 574913 CAGACAGGCAAAGTCGGTGTGCAGACCCTCATCTCGAGAAATGAGCTCGTTGGAGAAGGT 574854 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 || || ||||| || || ||||| || ||||| || ||||| || || ||||| || || Sbjct 574853 CAGGCCAGGCATGAGACCTCGCTTCTTGAGCCAGAAAATGGAGGCAAAAGATCCGGAGAA 574794 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTC 33476 ||| || || || || ||||||||||| ||||||| ||| ||| | | || ||| Sbjct 574793 GAAAATACCCTCAACGGCAGCAAAGGCGATAAGTCGCTCGCCAAAGGTAGACTCGTCGTC 574734 Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536 |||||||| ||||||| ||||||||||| || | || || || || || ||||| Sbjct 574733 GGAGATCCACTTGAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGGTCTCAATGGC 574674 Query 33537 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33596 || || || || || || || || || | |||||||| || | ||| || Sbjct 574673 GTTGAACAGGTAAGTTCGCTCCTTGGGGTCCTTGATGTAAGTATCAATGAGCAGAGAGTA 574614 Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33656 | || ||||| ||||| || || ||||| ||||||||||| || | ||||| | Sbjct 574613 GGTCTCGGAATGGATGTTCTCCATCATGATCTGGAATCCGTAGAAGCACTTGGCCTCAGG 574554 Query 33657 AATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGC 33716 | ||| || ||| | | || || || ||| || || || || || |||||| ||| Sbjct 574553 AGCCTGAACCTCTCCAGAGAACCGCTCAACCAGGTTCTCGTTGACAATACCGTCAGAGGC 574494 Query 33717 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTAT 33772 ||||| || |||| || || || ||| | || ||||| | |||| | || | Sbjct 574493 AGCAAAGAAAGCCAGCACGTGCGAAATGAAAAACTTCTCGTC-GCTGTTGAGCCGGTTCT 574435 Query 33773 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 33832 ||| || ||||| || | ||| | || || | ||||| || || ||||| | Sbjct 574434 CCCAGTCGCCCATATCCTTGCCGAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGG 574375 Query 33833 CCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 |||| || ||||| | ||| || |||| || || || ||||| | ||||| Sbjct 574374 CCTTCTTGTACATCTGCCAAATCTCATGGTACTGAATAGGGAAGAGCACAAA 574323 >seq5 Length=2743614 Score = 196 bits (216), Expect = 6e-45 Identities = 634/956 (66%), Gaps = 44/956 (5%) Strand=Plus/Minus Query 62892 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62951 || ||||| |||||||||||||| || || || | || | || ||||| || |||||| Sbjct 1439864 GCCACAGAAGCCAGATTACAAACAGCAACTTCTTCAGGAGACGAGTATTGAATAATCTCA 1439805 Query 62952 GTGCAAAGATTACTAC-ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63010 || || | ||| | || | ||||| || || | ||| || || || || |||||| Sbjct 1439804 GTACACAAATT-CGACGATTTGATCGTACCGAGATTCTGCTGGTTGGATTTCGCGTTACA 1439746 Query 63011 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63070 || ||||| || ||||| ||| || ||||| || ||| | |||||| || Sbjct 1439745 GCTGTCTTTATACAGCATGAACGGACCTCCTGTTTCGATTTGACTCGTGAGAATCGCCTT 1439686 Query 63071 CCAGACGACTCGAGCCTTTATTATAGATTTGTAT--CTCCTT--TCTCTTTCGTATAGTG 63126 | | | |||| || ||| ||| ||||| | |||| |||| | | || || Sbjct 1439685 GAACAGCTCCTGAGCGTTGATTTGAGAATTGTACAGCCCCTTCTTCTCATACTCATTGT- 1439627 Query 63127 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA- 63185 |||| | ||||| ||||||||||| |||| ||| ||| ||| | | || || Sbjct 1439626 ---ACAACCTCTCGAAATCGTCTCCCCAGACATCAGCCAGTCCTGGAGCT-CTTCTGGGG 1439571 Query 63186 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 63245 || | | |||||| | | || | | | ||| ||||||||| | |||||| | ||| Sbjct 1439570 CAGAAAAGCGACCATTTTTCGCCGTTTTCGACTTTTTTCATAAACAAATCAGGCACCCAG 1439511 Query 63246 AGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATC 63304 ||||| ||| || || || | | ||| | |||||| || ||| ||| | || Sbjct 1439510 AGAGC-ATAGAACAGGTCACGTGCTCTGTTTTCCTCTGCGCCATGATTTTTTCGCAAATT 1439452 Query 63305 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63364 || || ||| |||||| | |||||| || ||||| || | || | ||||||| || Sbjct 1439451 CAGAAAATCCAAAATATCCGCATGCCAAGGCTCCAAATACACTGCAAACGCTCCAGGTCG 1439392 Query 63365 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 63424 ||||||||| || ||||| | ||| | ||||| || || | ||||| | ||| |||| Sbjct 1439391 TTTGTTTCCCCCTTGATCAACGTACCGTGCGGTATTGTTGAACACTCTGAGCATGGGAAC 1439332 Query 63425 AATACCGTTTGATATAC---CATTG-GTACCGGAGAT-ATAGCTTCCACTGGCACGAATA 63479 ||||| ||| | || | ||| | ||| | || | ||| ||| |||| | || Sbjct 1439331 GATACC---TGA-AGACCGTCCTTGAGAACCTGTAATGAGAGC-TCCTTTGGCTCTGATG 1439277 Query 63480 TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT-AA 63538 || ||| |||||||| || ||||| |||| || || || || |||||| | Sbjct 1439276 TTGTGAATATGCAGACCTATACCTCCTGCTGTTTTGGAAATCTGAGCACA-CGTTTTGAG 1439218 Query 63539 CGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACAT 63598 |||||| ||||| || || ||| || | |||| || ||||||||| ||| Sbjct 1439217 CGTGTCGTAGATGCCGTCAATGGAGTCTGCTGCCATGGCAACGAGAAAACAG---GACGA 1439161 Query 63599 TTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 63655 | |||| || ||| || ||||| || |||||||||||||| || || ||| ||| Sbjct 1439160 AAGCTGACCCTGAGGAGTACCTGCATTGAACAAGGTAGGAGAAGCATGAGTGAAC--TTT 1439103 Query 63656 TTCAG----AAAGTAGATTGTACGTCTC-AATAGCTGAGTCTATATCCCATTGATGAATT 63710 | || |||| ||| |||||| || | | || || |||| | || || Sbjct 1439102 CTGAGAGATAAAGCAGA--GTACGTTTCGAGCACCTTGGT-GGTATCGTCTCCGTGGATG 1439046 Query 63711 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT-TGTTTATTTT 63769 ||| || || ||||| | ||| || ||||||||||| || | || || | ||| | Sbjct 1439045 GCTAGTGATACTCGCATGAGCATCTGTTGAGGTCTTTCCACTA-CTCGTCCCTGGATTCT 1438987 Query 63770 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63825 ||| | ||| ||||||||||| || || || ||||| ||| ||| | | ||||| Sbjct 1438986 CAAAAGGTACGATTTTTCCAACGTCTTGAATCCAAAGTAGGAGTAAGTGAGGTCTC 1438931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947052050040