Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 289 7e-73 seq5 120 8e-22 seq6 104 6e-17 >seq2 Length=4150472 Score = 289 bits (320), Expect = 7e-73 Identities = 624/918 (68%), Gaps = 14/918 (2%) Strand=Plus/Plus Query 363400 AAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAG 363459 ||||| ||||| | | ||||| ||| |||| || | | ||| || || || ||| Sbjct 324518 AAGACCCTGGAGCGAGCATACCTGCTTCGAGTCAACGGAGCTGTTGCCGAGCGACCCCAG 324577 Query 363460 CATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAA 363519 || ||| | ||||| || || | |||||||| | | ||| || ||||| Sbjct 324578 CAGATGATCATGCGAGTCTCTGTCGGTATCCACGGTGACAACATTGCCCGGGCCATTGAG 324637 Query 363520 ACATATAAGCTTCTAAGTGCTCGT-GTA-TTCACGCACGCCACGCCAACAATGTACAATG 363577 || || || || | | || | | ||| ||||| ||||| | || || | ||||| | Sbjct 324638 ACCTACAA-CTAC-ATGTCCCAGAAGTACTTCACCCACGCTTCCCCCACTCTCTACAACG 324695 Query 363578 CTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCA 363637 ||||||| | | || ||||||||||| || || || | || ||||||||||| |||| Sbjct 324696 CTGGAACCCCCCAGCCCCAGATGTCTTCGTGTTTCCTCGTCAACATGAAGGACGACTCCA 324755 Query 363638 TCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAA 363697 |||| || |||| || || || |||| |||||||| || |||||| ||| || || | Sbjct 324756 TCGACGGCATCTACGATACCCTCAAGACCTGTGCTCTCATCTCCAAGTCTGCCGGAGGTA 324815 Query 363698 TTGGTGTATCGATCCACAATGTTCGTG-CACAGAACAGTTACATTCGCGGCACAGGGGGA 363756 | ||| | || |||||||| |||| | ||| | | |||||| |||||| || Sbjct 324816 TCGGTCTCTCCATCCACAACATTCGAGCCACCG-GCTCCTACATTGCCGGCACCAACGGT 324874 Query 363757 TACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGAC 363816 ||| || || | || |||||||| || || | |||| ||||| | ||||| ||| Sbjct 324875 ACCTCCAACGGTATCGTGCCCATGCTCCGAGTCTACAACAACACTGCCCGATACGTTGAC 324934 Query 363817 CAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGAT 363876 |||||||| ||||| || || ||||| ||||| || |||||| || | ||| Sbjct 324935 CAGGGTGGTAACAAGCGACCCGGAGCCTTTGCCATGTACCTTGAGCCTTGGCACGACGAC 324994 Query 363877 ATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGAT 363936 || || ||||| ||||| || || ||| ||||| ||||| | || || || || Sbjct 324995 ATCTTCGAGTTCTGCGAGCTGCGAAAGAACCACGGAAAGGAGGAGATCCGAGCCCGAGAC 325054 Query 363937 CTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAG-AA 363995 |||||| || || ||| || | |||| || ||| |||| || || |||| | | Sbjct 325055 CTGTTCCTGGCCCTGTGGATTCCCGACCTGTTCATGGAGCGAGTCGA-GCAGAACGGCGA 325113 Query 363996 TTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACT- 364054 ||| | ||| | ||||| |||| || || |||||| ||| || | |||||||| | Sbjct 325114 GTGGACCCTCATGTGCCCCAACGAGTGCCCCGGTCTTGACGACGTCTACGGTGACGAGTT 325173 Query 364055 -ATGTTGCTCTATACGAAAAGTATGAATCGGAGGGA-AAGGCTCGTAAGACAATTCCCGC 364112 | | | || ||||| |||| || |||||| |||| || || || ||||| Sbjct 325174 CAAGAAG--CTGTACGAGCAGTACGAGCGAGAGGGACGAGGC-CGACGAACCATCCCCGC 325230 Query 364113 ACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTT 364172 |||||||| |||| ||| | || | |||| ||| | |||| |||| ||| | Sbjct 325231 CCAGAAGCTGTGGTACCACATTCTCGACTGCCAGACCGAGTCCGGAAACCCCTTCATGCT 325290 Query 364173 GTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAG 364232 ||||| || || |||||||| |||||||||||| || |||| || || || || Sbjct 325291 CTACAAGGACTCCTGCAACCGAAAGTCCAACCAGAAGAACCTGGGAACCATCAAGTCTTC 325350 Query 364233 CAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCT 364292 |||||| ||| ||||||| | || ||| | ||||||| ||| |||||| || ||||| Sbjct 325351 CAACCTGTGTTGCGAGATTGTCGAGTACTCTTCTCCCGATGAGGTTGCCGTCTGCAACCT 325410 Query 364293 TGCGTCGATCGCGCTTCC 364310 || || || || || || Sbjct 325411 GGCCTCCATTGCTCTGCC 325428 Score = 140 bits (154), Expect = 8e-28 Identities = 307/455 (67%), Gaps = 10/455 (2%) Strand=Plus/Plus Query 364708 TCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCT 364767 ||||| ||| ||||| ||| || ||||| || | || || |||||||| ||| Sbjct 325838 TCCAAGGTTGTCAAGCACGGTCTGCGAAACTCTCTGCTGGTCGCTCCTATGCCCACTGCT 325897 Query 364768 TCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTAT 364827 ||||| | ||||| ||||| ||||||||||||||| || | || ||| |||| Sbjct 325898 TCTACCTCTCAGATTCTCGGCTTCAACGAGTGCTTCGAGCCTTACACCTCCAACATTTAC 325957 Query 364828 TCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTT 364887 || || || |||||| |||| || || | | | || || | || ||||||| ||| Sbjct 325958 TCTCGACGAGTTCTTGCCGGTGAGTTCCAGATTGTCAACCCCTGGCTTCTCAAGGACCTT 326017 Query 364888 TCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCT 364947 || ||| || ||| || | ||||||||| || |||||| || || || Sbjct 326018 GTTGAGGTCGGTCTCTGGAACGAGACTATGAAGAACCGAATTGTCGCCGACAACGGATCC 326077 Query 364948 GTGCAGAACAT-TCCAGGAT-TTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGG 365005 ||||||||||| ||| || |||| ||||| ||| | ||||| ||||| |||| Sbjct 326078 GTGCAGAACATCCCCAACATCCCCCAGGAGATC--AAGGAGCTGTACAAGACCGTGTGGG 326135 Query 365006 AAATTTCC---ATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTC 365062 | |||||| | ||||| |||| || ||||| ||||| || | | || || | Sbjct 326136 AGATTTCCCAGAAGCGAA---TCATCGAGATGGCCGCCGACCGATCTCCCTTCATTGACC 326192 Query 365063 AGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGC 365122 || |||||| | ||| | ||| | |||| ||| | ||||| || ||||||| Sbjct 326193 AGTCCCAGTCCCTCAACATTCACATCAAGGAGCCCACCATGGGTAAGCTCACTTCCATGC 326252 Query 365123 ATTTCTACGGGTGGAAATCCGGTCTTAAGACAGGT 365157 | |||||||| ||||| ||||| ||||| ||| Sbjct 326253 ACTTCTACGGCTGGAAGAAGGGTCTCAAGACCGGT 326287 >seq5 Length=2743614 Score = 120 bits (132), Expect = 8e-22 Identities = 365/556 (66%), Gaps = 16/556 (3%) Strand=Plus/Plus Query 363772 GTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAG 363831 ||||||||||| | ||||| ||||||| || ||||||| || || || ||| || Sbjct 1439332 GTTCCCATGCTCAGAGTGTTCAACAATACCGCACGGTACGTTGATCAAGGGGGAAACAAA 1439391 Query 363832 CGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTT 363891 || || |||||||| ||||| | |||||| ||||| |||||||| || ||||| Sbjct 1439392 CGACCTGGAGCGTTTGCAGTGTATTTGGAGCCTTGGCATGCGGATATTTTGGATTTTCTG 1439451 Query 363892 GAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTT 363951 | | || ||||| || ||||||| | |||||||| ||||||||||| || Sbjct 1439452 AATTTGCGAAAAAATCATGGCGCAGAGGAAAACAGAGCACGTGACCTGTTCTATGCTCTC 1439511 Query 363952 TGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTG- 364010 ||||| |||| |||||||| || || || | || ||||| || || || Sbjct 1439512 TGGGTGCCTGATTTGTTTATGAAAAAAGTCGAAAACGGCGAAAAATGGTCGCTTTTCTGC 1439571 Query 364011 CCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGA 364070 |||| | | | |||||| || | ||||| ||||| ||||| | | | ||| | Sbjct 1439572 CCCAGAAG-AGCTCCAGGACTGGCTGATGTCTGGGGAGACGATTTCGAGAGGTTGTACAA 1439630 Query 364071 AAAGTATGAATCGGAGGGAAAGGCTCGTAAGA----CAATTC-CCGCACAGAAGCTATGG 364125 ||||||| || | | |||| ||| | ||| || ||| ||| |||| | Sbjct 1439631 TGAGTATGA----GAAGAAGGGGCT-GTACAATTCTCAAATCAACGCTCAGGAGCTGTTC 1439685 Query 364126 TTTGCCATCAT--GGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATT 364183 || || | || | || || || |||||| || | ||| |||| ||||| Sbjct 1439686 AAGGCGATTCTCACGAGT--CAAATCGAAACAGGAGGTCCGTTCATGCTGTATAAAGACA 1439743 Query 364184 CGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTA 364243 || ||| || |||||||||||| | || ||||| || | | || | |||| Sbjct 1439744 GCTGTAACGCGAAATCCAACCAGCAGAATCTCGGTACGATCAAATCGTCGAATTTGTGTA 1439803 Query 364244 CCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCG 364303 | ||||||||| ||||| | |||| || || ||| || ||||| || || || | | Sbjct 1439804 CTGAGATTATTCAATACTCGTCTCCTGAAGAAGTTGCTGTTTGTAATCTGGCTTCTGTGG 1439863 Query 364304 CGCTTCCGGCGTTTGT 364319 | ||||| | ||||| Sbjct 1439864 CTCTTCCTGAATTTGT 1439879 >seq6 Length=2655350 Score = 104 bits (114), Expect = 6e-17 Identities = 163/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 22420 ACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGA---ACAATGAA 22476 ||||||| | || ||||| ||||| || ||||| || || ||||| || | || Sbjct 574683 ACCATTCCCTGCATCAAGAAGAAGGCCGACTGGGCTCTCAAGTGGATCTCCGACGACGAG 574742 Query 22477 CGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGA 22536 | | || | || || ||||| || ||||||| ||||| || |||||||| || ||| Sbjct 574743 TCTACCTTTGGCGAGCGACTTATCGCCTTTGCTGCCGTTGAGGGTATTTTCTTCTCCGGA 574802 Query 22537 GCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCA 22596 | ||| | || || ||||| || || || | | ||||| || || || || || Sbjct 574803 TCTTTTGCCTCCATTTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGCCTGACCTTCTCC 574862 Query 22597 AATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCT 22649 || ||| | ||| |||||||||||||| || ||||| ||||| ||| |||| Sbjct 574863 AACGAGCTCATTTCTCGAGATGAGGGTCTGCACACCGACTTTGCCTGTCTGCT 574915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353282714858