Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2 116 3e-21 seq1 113 4e-20 >seq2 Length=4150472 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | ||| | || |||||||| || |||||||| || Sbjct 3070617 CCACCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 3070558 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| |||||||| || ||| |||| | |||||||||||||| || Sbjct 3070557 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 3070498 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 3070497 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 3070438 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || |||||||| || || || || ||||||||||| Sbjct 3070437 TCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCAT 3070391 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | ||| | || |||||||| || |||||||| || Sbjct 3374809 CCACCTCGGAGTCGCAGAACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 3374868 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| ||||||||||| ||| | || | |||||||||||||| || Sbjct 3374869 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCCGGGGGA 3374928 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 3374929 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 3374988 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCA 131233 |||| ||| | ||| || || || || || || || || || |||| Sbjct 3374989 TCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 3375034 >seq1 Length=4845111 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | || |||||||| || |||||||| ||| | Sbjct 2007182 CCACCTCGAAGTCGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 2007241 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || |||||||| || ||| | || | |||||||||||||| || Sbjct 2007242 AGAGTTCGTCCATCTTCGAGCTGCTTACCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGA 2007301 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| || || ||||| | || | || |||| |||||||| Sbjct 2007302 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACC 2007361 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| || || || || || || |||||||||||||| Sbjct 2007362 TCAAGGGTAATGGTCTTTCCAGTGAGGGTCTTCACGAAAATCTGCAT 2007408 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | ||| |||||||| || ||||||||||| | Sbjct 2006954 CCACCTCGAAGTCGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAC 2007013 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || ||| |||| | |||||||||||||| || Sbjct 2007014 AGAGTTCGTCCATCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 2007073 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| || || ||||| | || | || || | ||||| | Sbjct 2007074 ATTCCCTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCAGAAGACTCAACC 2007133 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || ||||| || || || |||||||| Sbjct 2007134 TCGAGGGTGATGGTCTTTCCAGTCAGAGTCTTGACAAAGATCTGCAT 2007180 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | ||| |||||||| || |||||||| || | Sbjct 2007410 CCACCTCGGAGTCGGAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2007469 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| |||||||| || ||| | || | |||||||||||||| ||| Sbjct 2007470 AGAGTTCGTCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGG 2007529 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| || || ||||| | || | || || | ||||||| Sbjct 2007530 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGACTCGACC 2007589 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || ||||| || || || ||||| |||||||| Sbjct 2007590 TCAAGGGTGATAGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 2007636 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 51810 GTTGCCGAGATCGCCCACGTGTCGCTCGGCGGAGTTGGGTGCGCCGTGGTGTTTGCCAAG 51869 ||||||||| || || ||||||||||| | | |||||| || ||||||| || | Sbjct 2763684 GTTGCCGAGGTCTCCAACGTGTCGCTCAGTGTCGTTGGGGGCTCCGTGGTTCTTCTTGAA 2763625 Query 51870 GGGATTAAAGTGCTCGCCGGCGGACGTGCACCCGTTGCTGGTGTCGCCGAACTCGTGCAC 51929 ||| || ||||| ||||||||| ||||| |||||| || |||| || ||||||||||| Sbjct 2763624 GGGGTTGAAGTGGGGGCCGGCGGAGGTGCAGCCGTTGGTGTTGTCTCCAAACTCGTGCAC 2763565 Query 51930 GTGAAAGCC 51938 ||| ||||| Sbjct 2763564 GTGGAAGCC 2763556 Score = 102 bits (112), Expect = 8e-17 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | || |||||||| ||||||||||| ||| Sbjct 2007638 CCACCTCGGAGTCGGAGGACCAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAG 2007697 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| |||||||| || ||| |||| | |||||||||||||| ||| Sbjct 2007698 AGGGTTCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGGTCCGGGGGG 2007757 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTC 131183 ||||| || ||||| || || ||||| | || | |||||||| |||||| Sbjct 2007758 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTATCGGAGGACTC 2007813 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | || ||||| | || | || || ||||| || ||||| || || Sbjct 2006530 GCCACCTCGGAGTCGGAGCACAAGGTGGAGAGTGGATTCCTTCTGGATGTTATAGTCAGA 2006589 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || |||||| |||||||| || ||| |||| | |||||||||||||| || Sbjct 2006590 AAGGGTTCGTCCGTCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 2006649 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||||| | || | || |||| |||||| | Sbjct 2006650 GATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCAAC 2006709 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || ||||| || || || |||||||| Sbjct 2006710 CTCAAGAGTGATAGTCTTTCCAGTCAGAGTCTTGACAAAGATCTGCAT 2006757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012687896960