Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2 127 2e-24 seq1 107 2e-18 seq5 86.0 5e-12 >seq2 Length=4150472 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | |||||||| || |||| ||||| ||||| | || Sbjct 3070391 ATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 3070450 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || || ||||||||||| ||||| || || || Sbjct 3070451 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 3070510 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| || ||||| || ||| | ||||| ||| ||| | || || |||||| Sbjct 3070511 CAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAAC 3070570 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || ||||| | ||| | ||| ||||| | || || ||| Sbjct 3070571 ATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGAGGTGGT 3070618 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22220 TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCG 22279 ||||||| ||||| || || | || || || || |||| || || ||||| | ||| Sbjct 3375034 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCG 3374975 Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339 | ||| | ||| | |||| || || || ||||||||||| ||||| || || || | Sbjct 3374974 ACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGC 3374915 Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACA 22399 | || || || || |||||||| ||| | ||||| ||| || |||| || ||||||| Sbjct 3374914 AGCGACTCATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTCTCTGACTACAACA 3374855 Query 22400 TTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 | || || || ||||| | ||| | ||| ||||| | || || ||| Sbjct 3374854 TCCAGAAGGAGTCCACTCTCCATCTTGTTCTGCGACTCCGAGGTGGT 3374808 Score = 104 bits (114), Expect = 2e-17 Identities = 260/392 (66%), Gaps = 5/392 (1%) Strand=Plus/Minus Query 130015 TCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTT 130074 |||||||| | ||| |||| ||||| | ||||||||| |||| ||||| ||| Sbjct 325101 TCGACTCGCTCCATGAACAGGTCGGGAATCCACAGGGCCAGGAACAGGTCTCGGGCTCGG 325042 Query 130075 CTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCAC 130134 | ||||| || ||| | ||| || ||| ||| | |||||| ||||||| Sbjct 325041 ATCTCCTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGATGTCGTCGTGCCAA 324982 Query 130135 GGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGC 130191 || |||| || || || | || || || ||| || || |||||||||| || Sbjct 324981 GGCTCAAGGTACATGGCAAAGGCTCCGGGTCGCTTGTTACCACCCTGGTCAACGTATCGG 324922 Query 130192 ACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTC 130251 | | |||||||||||||| | ||| | | | | ||||||| || ||||| |||| Sbjct 324921 GCAGTGTTGTTGTAGACTCGGAGCATGGGCACGATACCGTTGGAGGTACCGTTGGTGCCG 324862 Query 130252 TCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAAT 130311 ||||| | ||| || |||| ||| || | | ||||| || || ||| || | Sbjct 324861 GCAATGTAGGAGCCGGTGGCTCGAATGTTGTGGATGGAGAGACCGATACCTCCGGCAGAC 324802 Query 130312 TTTGATATCAACGCGCA-ATCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTT 130370 || || || | || || || | || || || || ||||| |||| ||| || || Sbjct 324801 TTGGAGATGAGAGCACAGGTCTTG-AGGGTATCGTAGATGCCGTCGATGGAGTCGTCCTT 324743 Query 130371 AATGTTTAGGAGGAAACACGAGGCCAATTGGG 130402 ||||| | |||||||||||| | || |||| Sbjct 324742 CATGTTGACGAGGAAACACGAAGACATCTGGG 324711 >seq1 Length=4845111 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || || || || |||||||||| || || || || Sbjct 2006757 ATGCAGATCTTTGTCAAGACTCTGACTGGAAAGACTATCACTCTTGAGGTTGAGTCCTCC 2006698 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || || |||||||||||||| || || || || Sbjct 2006697 GACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 2006638 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| || ||||| || ||| | ||||| || ||| | || || || ||| Sbjct 2006637 CAGCGACTTATCTTCGCCGGTAAGCAGCTTGAGGACGGACGAACCCTTTCTGACTATAAC 2006578 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || |||||||| Sbjct 2006577 ATCCAGAAGGAATCCAC 2006561 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || || || || |||| || || || || | | Sbjct 2007180 ATGCAGATCTTTGTCAAGACTCTGACTGGAAAGACCATCACCCTCGAGGTTGAGTCTTCT 2007121 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| ||||||||||| ||||| || || || Sbjct 2007120 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAG 2007061 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| || ||||| || ||| | |||||| || || | || ||||||||| Sbjct 2007060 CAGCGACTTATCTTCGCCGGTAAGCAGCTTGAGGATGGACGAACTCTGTCTGATTACAAC 2007001 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || |||||| | ||| | || | ||| | || || || Sbjct 2007000 ATCCAGAAGGAGTCCACCCTTCATCTCGTCCTCCGACTTCGAGGTGG 2006954 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || || | || ||||| || || || || Sbjct 2007408 ATGCAGATTTTCGTGAAGACCCTCACTGGAAAGACCATTACCCTTGAGGTCGAGTCCTCC 2007349 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || ||||| ||||||||||| ||||| || || || Sbjct 2007348 GACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAG 2007289 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || ||| | || ||| || || | ||||| |||||| Sbjct 2007288 CAGCGACTCATTTTCGCTGGTAAGCAGCTCGAAGATGGACGAACTCTGTCCGACTACAAC 2007229 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | ||| | || | ||| | || || ||| Sbjct 2007228 ATCCAGAAGGAGTCTACTCTCCATCTGGTCCTTCGACTTCGAGGTGGT 2007181 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 || ||||||| | ||| | |||| || ||||| ||||||||||| || || || | Sbjct 2007809 CCTCCGATACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATCCCCCCGG 2007750 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 | || || || || || || || || || ||| | |||||| ||| ||| ||||||| | Sbjct 2007749 ACCAGCAGCGACTCATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACT 2007690 Query 22394 ACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||||| || || ||||| | ||| | || | ||| | || || ||| Sbjct 2007689 ACAACATTCAGAAGGAGTCCACTCTCCATCTGGTCCTCCGACTCCGAGGTGGT 2007637 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| ||||| || || | | Sbjct 2007636 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACTATCACCCTTGAGGTCGAGTCTTCT 2007577 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| ||||||||||| || || || || || Sbjct 2007576 GACACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATCCCCCCGGACCAG 2007517 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || ||| | ||||| || || | || || |||||| Sbjct 2007516 CAGCGACTCATTTTCGCTGGAAAGCAGCTTGAGGACGGACGAACTCTGTCTGACTACAAC 2007457 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || |||||| | ||| | || | ||| | || || ||| Sbjct 2007456 ATCCAGAAGGAGTCCACCCTTCATCTTGTCCTCCGACTCCGAGGTGGT 2007409 >seq5 Length=2743614 Score = 86.0 bits (94), Expect = 5e-12 Identities = 144/203 (71%), Gaps = 9/203 (4%) Strand=Plus/Minus Query 130014 TTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTT 130073 ||||||| ||||||||||||||| || ||||| || || || |||| || || ||| | Sbjct 1439544 TTCGACTTTTTTCATAAACAAATCAGGCACCCAGAGAGCATAGAACAGGTCACGTGCTCT 1439485 Query 130074 TCTATCCTCGGCACCCATGTTACGTTTC---AGTTCAAGGAAATCGTAAATGTCGGCGTG 130130 | ||||| || ||||| | |||| | ||| || ||||| |||| || || || Sbjct 1439484 GTTTTCCTCTGC-GCCATGAT-TTTTTCGCAAATTC-AGAAAATCCAAAATATCCGCATG 1439428 Query 130131 CCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTG 130187 ||| || || | ||| | ||| | || || |||||| |||||||| ||||||| Sbjct 1439427 CCAAGGCTCCAAATACACTGCAAACGCTCCAGGTCGTTTGTTTCCCCCTTGATCAACGTA 1439368 Query 130188 GCGCACGGCATTGTTGTAGACTC 130210 || ||| ||||||| | |||| Sbjct 1439367 CCGTGCGGTATTGTTGAACACTC 1439345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727902806735