Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016-
03-01] 19 sequences; 21,758,297 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq2 127 2e-24
seq1 107 2e-18
seq5 86.0 5e-12
>seq2
Length=4150472
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| |||||||| || || | |||||||| || |||| ||||| ||||| | ||
Sbjct 3070391 ATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 3070450
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | |||| || || || ||||||||||| ||||| || || ||
Sbjct 3070451 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 3070510
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || ||||| || ||||| || ||| | ||||| ||| ||| | || || ||||||
Sbjct 3070511 CAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAAC 3070570
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || ||||| | ||| | ||| ||||| | || || |||
Sbjct 3070571 ATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGAGGTGGT 3070618
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 22220 TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCG 22279
||||||| ||||| || || | || || || || |||| || || ||||| | |||
Sbjct 3375034 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCG 3374975
Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339
| ||| | ||| | |||| || || || ||||||||||| ||||| || || || |
Sbjct 3374974 ACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGC 3374915
Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACA 22399
| || || || || |||||||| ||| | ||||| ||| || |||| || |||||||
Sbjct 3374914 AGCGACTCATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTCTCTGACTACAACA 3374855
Query 22400 TTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
| || || || ||||| | ||| | ||| ||||| | || || |||
Sbjct 3374854 TCCAGAAGGAGTCCACTCTCCATCTTGTTCTGCGACTCCGAGGTGGT 3374808
Score = 104 bits (114), Expect = 2e-17
Identities = 260/392 (66%), Gaps = 5/392 (1%)
Strand=Plus/Minus
Query 130015 TCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTT 130074
|||||||| | ||| |||| ||||| | ||||||||| |||| ||||| |||
Sbjct 325101 TCGACTCGCTCCATGAACAGGTCGGGAATCCACAGGGCCAGGAACAGGTCTCGGGCTCGG 325042
Query 130075 CTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCAC 130134
| ||||| || ||| | ||| || ||| ||| | |||||| |||||||
Sbjct 325041 ATCTCCTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGATGTCGTCGTGCCAA 324982
Query 130135 GGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGC 130191
|| |||| || || || | || || || ||| || || |||||||||| ||
Sbjct 324981 GGCTCAAGGTACATGGCAAAGGCTCCGGGTCGCTTGTTACCACCCTGGTCAACGTATCGG 324922
Query 130192 ACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTC 130251
| | |||||||||||||| | ||| | | | | ||||||| || ||||| ||||
Sbjct 324921 GCAGTGTTGTTGTAGACTCGGAGCATGGGCACGATACCGTTGGAGGTACCGTTGGTGCCG 324862
Query 130252 TCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAAT 130311
||||| | ||| || |||| ||| || | | ||||| || || ||| || |
Sbjct 324861 GCAATGTAGGAGCCGGTGGCTCGAATGTTGTGGATGGAGAGACCGATACCTCCGGCAGAC 324802
Query 130312 TTTGATATCAACGCGCA-ATCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTT 130370
|| || || | || || || | || || || || ||||| |||| ||| || ||
Sbjct 324801 TTGGAGATGAGAGCACAGGTCTTG-AGGGTATCGTAGATGCCGTCGATGGAGTCGTCCTT 324743
Query 130371 AATGTTTAGGAGGAAACACGAGGCCAATTGGG 130402
||||| | |||||||||||| | || ||||
Sbjct 324742 CATGTTGACGAGGAAACACGAAGACATCTGGG 324711
>seq1
Length=4845111
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || ||| | || || || || |||||||||| || || || ||
Sbjct 2006757 ATGCAGATCTTTGTCAAGACTCTGACTGGAAAGACTATCACTCTTGAGGTTGAGTCCTCC 2006698
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | |||| || || || |||||||||||||| || || || ||
Sbjct 2006697 GACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 2006638
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || ||||| || ||||| || ||| | ||||| || ||| | || || || |||
Sbjct 2006637 CAGCGACTTATCTTCGCCGGTAAGCAGCTTGAGGACGGACGAACCCTTTCTGACTATAAC 2006578
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || ||||||||
Sbjct 2006577 ATCCAGAAGGAATCCAC 2006561
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || ||| | || || || || |||| || || || || | |
Sbjct 2007180 ATGCAGATCTTTGTCAAGACTCTGACTGGAAAGACCATCACCCTCGAGGTTGAGTCTTCT 2007121
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | |||| || ||||| ||||||||||| ||||| || || ||
Sbjct 2007120 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAG 2007061
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || ||||| || ||||| || ||| | |||||| || || | || |||||||||
Sbjct 2007060 CAGCGACTTATCTTCGCCGGTAAGCAGCTTGAGGATGGACGAACTCTGTCTGATTACAAC 2007001
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| || || || |||||| | ||| | || | ||| | || || ||
Sbjct 2007000 ATCCAGAAGGAGTCCACCCTTCATCTCGTCCTCCGACTTCGAGGTGG 2006954
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || || || | || || || || | || ||||| || || || ||
Sbjct 2007408 ATGCAGATTTTCGTGAAGACCCTCACTGGAAAGACCATTACCCTTGAGGTCGAGTCCTCC 2007349
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || |||| || ||||| ||||||||||| ||||| || || ||
Sbjct 2007348 GACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAG 2007289
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || || || || ||| | || ||| || || | ||||| ||||||
Sbjct 2007288 CAGCGACTCATTTTCGCTGGTAAGCAGCTCGAAGATGGACGAACTCTGTCCGACTACAAC 2007229
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || || || | ||| | || | ||| | || || |||
Sbjct 2007228 ATCCAGAAGGAGTCTACTCTCCATCTGGTCCTTCGACTTCGAGGTGGT 2007181
Score = 91.5 bits (100), Expect = 1e-13
Identities = 124/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333
|| ||||||| | ||| | |||| || ||||| ||||||||||| || || || |
Sbjct 2007809 CCTCCGATACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATCCCCCCGG 2007750
Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393
| || || || || || || || || || ||| | |||||| ||| ||| ||||||| |
Sbjct 2007749 ACCAGCAGCGACTCATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACT 2007690
Query 22394 ACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|||||||||| || || ||||| | ||| | || | ||| | || || |||
Sbjct 2007689 ACAACATTCAGAAGGAGTCCACTCTCCATCTGGTCCTCCGACTCCGAGGTGGT 2007637
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | ||||| || || |||| ||||| || || | |
Sbjct 2007636 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACTATCACCCTTGAGGTCGAGTCTTCT 2007577
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | |||| || ||||| ||||||||||| || || || || ||
Sbjct 2007576 GACACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATCCCCCCGGACCAG 2007517
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || || || || ||| | ||||| || || | || || ||||||
Sbjct 2007516 CAGCGACTCATTTTCGCTGGAAAGCAGCTTGAGGACGGACGAACTCTGTCTGACTACAAC 2007457
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || |||||| | ||| | || | ||| | || || |||
Sbjct 2007456 ATCCAGAAGGAGTCCACCCTTCATCTTGTCCTCCGACTCCGAGGTGGT 2007409
>seq5
Length=2743614
Score = 86.0 bits (94), Expect = 5e-12
Identities = 144/203 (71%), Gaps = 9/203 (4%)
Strand=Plus/Minus
Query 130014 TTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTT 130073
||||||| ||||||||||||||| || ||||| || || || |||| || || ||| |
Sbjct 1439544 TTCGACTTTTTTCATAAACAAATCAGGCACCCAGAGAGCATAGAACAGGTCACGTGCTCT 1439485
Query 130074 TCTATCCTCGGCACCCATGTTACGTTTC---AGTTCAAGGAAATCGTAAATGTCGGCGTG 130130
| ||||| || ||||| | |||| | ||| || ||||| |||| || || ||
Sbjct 1439484 GTTTTCCTCTGC-GCCATGAT-TTTTTCGCAAATTC-AGAAAATCCAAAATATCCGCATG 1439428
Query 130131 CCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTG 130187
||| || || | ||| | ||| | || || |||||| |||||||| |||||||
Sbjct 1439427 CCAAGGCTCCAAATACACTGCAAACGCTCCAGGTCGTTTGTTTCCCCCTTGATCAACGTA 1439368
Query 130188 GCGCACGGCATTGTTGTAGACTC 130210
|| ||| ||||||| | ||||
Sbjct 1439367 CCGTGCGGTATTGTTGAACACTC 1439345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419727902806735
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |