Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq6 165 2e-35 seq1 127 4e-24 seq2 107 4e-18 seq3 87.8 4e-12 >seq6 Length=2655350 Score = 165 bits (182), Expect = 2e-35 Identities = 411/618 (67%), Gaps = 7/618 (1%) Strand=Plus/Minus Query 251526 CATCACACCTGGACGT-TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCT 251584 ||| ||||| || | | || || ||||| || || |||||||| || | ||| || Sbjct 575213 CATGACACC-GGCCTTCTGGTAGTCAGACACTCGCTTCTCGAAGAAGTTGGTCTTTCCAG 575155 Query 251585 CCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGC 251644 ||||||| || |||||||||||| |||||||| |||| ||||| |||||| | | Sbjct 575154 CCAGAGAAATGTTCTCCATGAAGTCAAAGGGGTTGGTGGAGTTGTAGACCTTGGGGTTTC 575095 Query 251645 CAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGT 251704 |||| || || | | ||||| ||||||||||| | ||||||| ||| || | | || Sbjct 575094 CAAGAGCAACAAGCAGACGGTCGGCCACAAACTCAATGTACTGTCGCATGAGCTTGGCGT 575035 Query 251705 TCATGCCAATCATACGACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTG 251764 |||| || | || || |||||| | || ||| | ||| |||| || || |||| | Sbjct 575034 TCATACCGAGCAGACCACAAGGGAGAGCATCAGTAAGGAACTCCTGCTCAATGCCAACAG 574975 Query 251765 CCTCCTCCACAATTGCCTTCAC-CTGTGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTAC 251823 |||| | | | ||| || | | | | || | |||||| || | ||| | Sbjct 574974 CCTCGACAATGACGTCCTCGACAATCTTCTTG-GAGGGTCGGTTCTCGAGGTGAGAGAAG 574916 Query 251824 AGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGA 251883 || || | |||| | |||||||||||| || ||| |||| ||||||||| | Sbjct 574915 AGCAGACAGGCAAAGTCGGTGTGCAGACCCTCATCTCGAGAAATGAGCTCGTTGGAGAAG 574856 Query 251884 CCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAG 251943 |||||||||||| | || || ||| |||||||||| || | | ||| ||||| ||| Sbjct 574855 GTCAGGCCAGGCATGAGACCTCGCTTCTTGAGCCAGAAAATGGAGGCAAAAGATCCGGAG 574796 Query 251944 AACAGCAGACCCTCGACACACACCCATGCAACAAGGCGCTCAGCAAA---CGACTTGTCC 252000 || | | |||||| || | | || | ||| ||||| |||| |||| ||| Sbjct 574795 AAGAAAATACCCTCAACGGCAGCAAAGGCGATAAGTCGCTCGCCAAAGGTAGACTCGTCG 574736 Query 252001 TGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATT 252060 | || | |||| | ||||| | |||||||| | ||| || || || || Sbjct 574735 TCGGAGATCCACTTGAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGGTCTCAATG 574676 Query 252061 GCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAG 252120 || | || || | | ||||| ||||| |||| | ||||| || |||||| Sbjct 574675 GCGTTGAACAGGTAAGTTCGCTCCTTGGGGTCCTTGATGTAAGTATCAATGAGCAGAGAG 574616 Query 252121 TACATCTCCGAATGGATG 252138 || |||| ||||||||| Sbjct 574615 TAGGTCTCGGAATGGATG 574598 Score = 87.8 bits (96), Expect = 4e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 280177 TTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGG 280236 |||||||||| || || |||||||| || || ||||| || || || || || | Sbjct 233244 TTGGACCCAACGGAGCTGGTAAGTCGACTCTCATCAAGGTGCTCACCGGAGAAGTCGTTC 233303 Query 280237 CCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACG 280296 | || || || || |||||| |||||| |||| || | ||| | |||||||||| Sbjct 233304 CTACCGAAGGAAAGGTCGAGAAGCACCCCAACCTGCGAATCGGATACATTGCTCAGCACG 233363 Query 280297 CTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCT 280356 || | || ||| |||| | ||| ||| | ||| || ||||| ||| | |||||||| | Sbjct 233364 CTCTGCAGCACGTCGAACAGCACAAGGAAAAGACCCCCAACCAGTACCTGCAGTGGCGAT 233423 Query 280357 A 280357 | Sbjct 233424 A 233424 >seq1 Length=4845111 Score = 127 bits (140), Expect = 4e-24 Identities = 387/586 (66%), Gaps = 24/586 (4%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||||||| ||||||| ||||| || || || |||| ||||||||||| ||| Sbjct 2676073 GGTGAGGATCTGTGTAACTGTGAGTTCTCTCTGGCTTACGGTGCCAAGATTCTGCTGAAC 2676014 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| || ||||||| ||| || || ||||| || ||||| || || Sbjct 2676013 CGAACCCAGCTGCGTCTCAAGCGAGGCCGACGATACGGTCTGTGTGGCCCCAACGGTGCT 2675954 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 |||||| ||||| ||||| |||||||| ||||| ||| | || || ||||| || || Sbjct 2675953 GGTAAGTCTACTCTGATGCGAGCCATTGCCAACGGCCAGGTCGAGGG-TTTCCCCACCCA 2675895 Query 279525 TCT-GAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCAC 279583 ||| | || || | || || |||||||| ||| ||| | | || | || Sbjct 2675894 GGACGAGTGTCGAACTGTCTTCGTCGACCACGACATTGACGGTACTCACGCCGACACCAA 2675835 Query 279584 TGTGTTCGACTTCCTAACGTCTGACAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAAT 279643 || |||||| ||||| || | | | | | || | | | ||||| Sbjct 2675834 CGTTGTCGACT-----ACGTCCGAAAGACCGCCGGCG-AGTCCATCGGTACCGAGGAGGA 2675781 Query 279644 CATCCAGAAACTGGAGGCCAATGGTTT--TGATGAAAGA----ATG--CGTAATCTGCCA 279695 ||| || | | || || ||| || | | || ||| | ||| ||| Sbjct 2675780 GGTCC-GAGCCCAGCTGCT--TGATTTCCTGTTCACCGACGAGATGACCCGAAT--GCCC 2675726 Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 | |||||||| || || ||||||||||||||||| || | |||| |||| | Sbjct 2675725 ATCACCTCTCTGTCCGGAGGATGGAAGATGAAGCTGGCTCTGGCCACCGCCGTTCTGCGA 2675666 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 |||||| |||| |||||||||||||| |||||||| |||| ||| |||||| ||| Sbjct 2675665 AAGGCCGATATCCTGCTGCTTGATGAGCCCACCAACCATCTGGATACCGTCAACGTGGCC 2675606 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||| | || |||||| | || ||| | | | | ||| |||| || || || ||| Sbjct 2675605 TGGTTGGTCAACTACCTCAACA-CCTGTGG--TATCACCTCCATCATCGTGTCCCATGAC 2675549 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGC 279921 ||||| ||||| || ||| ||| ||| || ||||| |||| Sbjct 2675548 TCTGGTTTCCTCGACAACGTCTGCGAGTACATTATCCACTACGAGC 2675503 Score = 118 bits (130), Expect = 2e-21 Identities = 145/195 (74%), Gaps = 5/195 (3%) Strand=Plus/Minus Query 280648 CCAAGAATG---TTGAGGACCA-TATGACCAAGCTGGGTCTGGACCCCGAGTTTACAACT 280703 ||||||| | |||||| ||| | || || ||||||||||| |||||| || || Sbjct 2674734 CCAAGAAGGAGATTGAGGCCCACTGTGCCCTC-CTGGGTCTGGAGCCCGAGCTTGTCTCT 2674676 Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCT 280763 |||||||| || || |||||||| ||||| ||||||||||| || || | | || | Sbjct 2674675 CACTCTCGAATCCGAGGTCTTTCCGGAGGACAGAAGGTCAAGCTGGTGCTGGCCGCCTGT 2674616 Query 280764 CTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAG 280823 ||||| | || || |||||||||| || ||||||||||||||||||||||| || Sbjct 2674615 ACCTGGCAGCGACCCCATCTGATCGTTCTTGATGAGCCTACCAACTATCTGGACCGAGAC 2674556 Query 280824 AGCCTGGGCGCTCTG 280838 || || |||||| Sbjct 2674555 TCTCTCGGAGCTCTG 2674541 >seq2 Length=4150472 Score = 107 bits (118), Expect = 4e-18 Identities = 388/601 (65%), Gaps = 7/601 (1%) Strand=Plus/Minus Query 293173 GAGATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTC 293232 || ||||||||| |||||||||| |||||| || | | ||| | ||| Sbjct 326142 GAAATCTCCCACACGGTCTTGTACAGCTCCTTGATCTCCTGGGGGATGTTGGGGATGTTC 326083 Query 293233 TGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACG 293291 || | || || || ||| | ||| |||||||||| |||||| ||| || || || Sbjct 326082 TGCACGGATCCGTTGTCGGCGACAATTCGGTTCTTCATAGTCTCGTTCCAGAGACCGACC 326023 Query 293292 AGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCG 293351 ||| || || || ||| | | |||||||| |||||||||| || ||| || Sbjct 326022 T-CAACAAGGTCCTTGAGAAGCCAGGGGTTGACAATCTGGAACTCACCGGCAAGAACTCG 325964 Query 293352 ACGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGC 293411 || ||||||||| || ||| || ||| ||| | ||| |||||||| Sbjct 325963 TCGAGAGTAAATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGAAGCCGAGAATCTGAGA 325904 Query 293412 AGTAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACCCTTCTTGACACG 293471 ||||| || || |||||| |||| | ||||||||| | || ||| | ||||||| Sbjct 325903 GGTAGAAGCAGTGGGCATAGGAGCGACCAGCAGAGAGTTTCGCAGACCGTGCTTGACAAC 325844 Query 293472 C---GATTCGAGACCCGCCCAGTCC-AGAGCAGTCTGAGGTGTAACACCCCAGAGATGAT 293527 | || | ||| | |||| ||| ||||| || || | ||| ||| | | Sbjct 325843 CTTGGACTTGAGGTCGTCCCACTCCCAGAGCTCGGTGGGG-GAAACGTTCCACATGTCGA 325785 Query 293528 ACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCAT 293587 |||||| | |||||| ||||||||| |||| ||||| | || || | |||| Sbjct 325784 ACTGCAGGTCTCCCTTGGAGGCAGGAGAGCCCTGGAAGGTCTCGTAGGCACCCTCCTCAA 325725 Query 293588 CAGAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGT 293647 | | ||| ||| ||||| || || | ||| ||| ||||||||||| || Sbjct 325724 TGGCCATCTCCATAGAGGCCTCGACGGCTCCGTGGTAGATGGTCTCGAAGATCTGGATGT 325665 Query 293648 TGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGCA 293707 ||||||| |||| || || ||||| || | ||| | ||| ||| || Sbjct 325664 TGAGCTTCTTGGCCTCGTCGGACTCAAAGGGGAGACGCAGAGCCATGAAGGTATCAGCCA 325605 Query 293708 GACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGAA 293767 ||||||| ||||| | | | | ||| || | ||| ||||| | ||| |||||||||| Sbjct 325604 GACCCTGGACACCCAGAGCGATGGGTCGGTGTCGCATGTTGGACTTCTTGGCCTCGGGAA 325545 Query 293768 C 293768 | Sbjct 325544 C 325544 >seq3 Length=2956712 Score = 87.8 bits (96), Expect = 4e-12 Identities = 156/224 (70%), Gaps = 9/224 (4%) Strand=Plus/Minus Query 217747 AAGAAGACCGATGG--CGTC-AAGAAGACTCGTCTCACGGGCATCAAGAAGCTCACGGAC 217803 || ||||||||||| |||| || |||| || ||||| | | ||| || ||| Sbjct 2329477 AAAAAGACCGATGGTTCGTCGAAAAAGAAGCGAATCACGACCTTGGTGAAACTGGAAGAC 2329418 Query 217804 GCTGCATGGGCTGGCACCAAAAACTCTGGTCTC---TGCACTCTCATCCTGACAGAGGGA 217860 ||| |||||| ||||| ||||| | || || || || ||||| |||||| Sbjct 2329417 GCTCAGCTGGCTGGAACCAAGCG---TGGTCACGAGTGTACGCTGATTCTGACCGAGGGA 2329361 Query 217861 GACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCCGTGGTGGGTCGTGAAAGGTATGGT 217920 |||||||| || |||| | ||||||||||| ||| | || || || ||||||| Sbjct 2329360 GACTCAGCCATGACCATGGCCAATGCTGGTCTTGCTGTGATTGGACGAGAGCGGTATGGA 2329301 Query 217921 ATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGCGATGCCTC 217964 ||| || || ||||||||| |||||||||| || || || || Sbjct 2329300 GCCTTTCCTCTGCGTGGTAAGATGCTCAACGTCCGAGAAGCGTC 2329257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836549785979