Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1 170 4e-37 seq6 161 2e-34 seq2 159 6e-34 seq3 84.2 4e-11 >seq1 Length=4845111 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||| || || || ||||| || |||||||| || ||||| Sbjct 2007182 CCACCTCGAAGTCGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 2007241 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || ||||| ||||||| || ||||| || ||| Sbjct 2007242 AGAGTTCGTCCATCTTCGAGCTGCTTACCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGA 2007301 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | |||||| || |||||||| | || || || Sbjct 2007302 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACC 2007361 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| ||||| ||||||||||| ||||| |||||||| Sbjct 2007362 TCAAGGGTAATGGTCTTTCCAGTGAGGGTCTTCACGAAAATCTGCAT 2007408 Score = 150 bits (166), Expect = 3e-31 Identities = 159/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || |||||||| || |||||||| || || || || || | || || || | Sbjct 2007429 CAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTTCGTCCGTCCTCAA 2007488 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || ||||| ||||||| || ||||| || || || || |||||||| |||| Sbjct 2007489 GCTGCTTTCCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGAA 2007548 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| | ||||||| || |||||||| | || || || || | |||||| || || | Sbjct 2007549 TCTTGGACTTGACGTTGTCAATGGTGTCAGAAGACTCGACCTCAAGGGTGATAGTCTTGC 2007608 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || |||||||||||||| |||||||| Sbjct 2007609 CGGTCAGGGTCTTGACGAAGATCTGCAT 2007636 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || ||||| || || ||||||||||| || || Sbjct 2006531 CCACCTCGGAGTCGGAGCACAAGGTGGAGAGTGGATTCCTTCTGGATGTTATAGTCAGAA 2006590 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || |||| || ||||| || || Sbjct 2006591 AGGGTTCGTCCGTCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 2006650 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| || |||||||| | || || || Sbjct 2006651 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCAACC 2006710 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || ||||| || || |||||||| || |||||||| Sbjct 2006711 TCAAGAGTGATAGTCTTTCCAGTCAGAGTCTTGACAAAGATCTGCAT 2006757 Score = 113 bits (124), Expect = 8e-20 Identities = 471/729 (65%), Gaps = 17/729 (2%) Strand=Plus/Plus Query 225280 ACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTTCAGGTCGTA 225339 |||||| ||||| |||||||||||||| | ||| || | | | | ||| ||||| Sbjct 2675372 ACCCTCAAGGAAACCGGGCTCGGGGAAGGAGAAGTTGATCTCGGAGGCTCCCAGCTCGTA 2675431 Query 225340 GTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGAGGTGCTTCGT 225399 ||| || || || ||| || || | || ||||| || || ||| Sbjct 2675432 GTAGGACTTGGCGGAAGGCACCTTCTTGACAAACTCGGAGAGGTTACCCTTGTACTTTCG 2675491 Query 225400 GAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGAAGCCAGA 225459 ||||||| || |||||| || | ||| | ||| || ||| ||||| ||||| Sbjct 2675492 CAGCTTGAA--TCG-CTCGTAGTGGATAATGTACTCGCAGACGTTGTCGAGGAAACCAGA 2675548 Query 225460 GTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGATGAGCCA 225519 ||| |||||||| |||||||| | | | | |||| ||||||| ||| | ||| Sbjct 2675549 GTCATGGGACACGATGATGGAGGTGA--TACCACAGGTG-TTGAGGTAGTTGACCAACCA 2675605 Query 225520 TGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATC 225579 ||||||||| | |||| ||||| || || || || || |||||||| || || | Sbjct 2675606 GGCCACGTTGACGGTATCCAGATGGTTGGTGGGCTCATCAAGCAGCAGGATATCGGCCTT 2675665 Query 225580 AATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCCGAT 225639 || | |||| | |||| ||||||||| ||||| || |||||||| ||| ||| Sbjct 2675666 TCGCAGAACGGCGGTGGCCAGAGCCAGCTTCATCTTCCATCCTCCGGACAGAGAGGTGAT 2675725 Query 225640 TGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGAGC--GTCTGGATAATGCGC 225697 | | | | | | ||| || | | || || ||| | || | | | | Sbjct 2675726 GGGCATTCGGGTCATCTCGTCGGTGAACAGGAAATCAAGCAGCTGGGCTCGGACCTCCTC 2675785 Query 225698 -TCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAATCATATACGGTCAT 225756 |||| | | || || || || | |||| || || ||| || ||| | | Sbjct 2675786 CTCGGTACCGATG-GACTCGC--CG--GCGGTCTTTCG-GACGTAGTCGACAACGTTGGT 2675839 Query 225757 GTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCT-GAGAAGCAT 225815 ||| | | || |||||||||||||||| ||| | || || || || | | | Sbjct 2675840 GTCGGCGTGAGTACCGTCAATGTCGTGGTCGACGAAGACAGTTCGACACTCGTCCTGGGT 2675899 Query 225816 CGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGC 225875 |||||| ||||| | |||||| || ||||| || || | ||| ||| ||| || || | Sbjct 2675900 -GGGGAAACCCTCGACCTGGCCGTTGGCAATGGCTCGCATCAGAGTAGACTTACCAGCAC 2675958 Query 225876 CGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCA 225935 ||||||| || || ||||| | || ||||||| || | || ||||| Sbjct 2675959 CGTTGGGGCCACACAGACCGTATCGTCGGCCTCGCTTGAGACGCAGCTGGGTTCGGTTCA 2676018 Query 225936 GGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCT 225995 | || |||||| |||| || || || |||||||| || | ||||| ||||||||||| | Sbjct 2676019 GCAGAATCTTGGCACCGTAAGCCAGAGAGAACTCACAGTTACACAGATCCTCACCCTCGT 2676078 Query 225996 CGGTCTCCT 226004 || ||||| Sbjct 2676079 CGTCCTCCT 2676087 >seq6 Length=2655350 Score = 161 bits (178), Expect = 2e-34 Identities = 574/886 (65%), Gaps = 11/886 (1%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||||||||| || || || || |||||||||||||| ||| || | Sbjct 575213 CATGACACCGGCCTTCTGGTAGTCAGACACTCGCTTCTCGAAGAAGTTGGTCTTTCCAGC 575154 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 || |||||| ||||||||||||||||||||| || | | |||||||| || Sbjct 575153 CAGAGAAATGTTCTCCATGAAGTCAAAGGGGTTGGTGGAGTTGTAGACCTTGGGGTTTCC 575094 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 || || | | ||||| ||||| ||||| |||||||| | ||| || | | ||| Sbjct 575093 AAGAGCAACAAGCAGACGGTCGGCCACAAACTCAATGTACTGTCGCATGAGCTTGGCGTT 575034 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 ||| || | || | || |||| || || || ||| |||| || || | || || Sbjct 575033 CATACCGAGCAGACCACAAGGGAGAGCATCAGTAAGGAACTCCTGCTCAATGCCAACAGC 574974 Query 10175 TTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATACAG 10234 || | | || | || || | | ||| | ||||||||| | || | || Sbjct 574973 CTCGACAATGACGTCCTCGACAATCTTCTTGGAGGGTCGGTTCTCGAGGTGAGAGAAGAG 574914 Query 10235 GAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACC 10294 || |||| | ||| || ||||| || || |||| ||||||||| || Sbjct 574913 CAGACAGGCAAAGTCGGTGTGCAGACCCTCATCTCGAGAAATGAGCTCGTTGGAGAAGGT 574854 Query 10295 CAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAA 10354 ||| || |||||||| || || || ||||||||||||| | || || |||||||| Sbjct 574853 CAGGCCAGGCATGAGACCTCGCTTCTTGAGCCAGAAAATGGAGGCAAAAGATCCGGAGAA 574794 Query 10355 CAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAG---GAGCGGTCGCG 10411 | || |||||| ||| | |||||| || ||||| | ||| || |||| Sbjct 574793 GAAAATACCCTCAACGGCAGCAAAGGCGATAAGTCGCTCGCCAAAGGTAGACTCGTCGTC 574734 Query 10412 CGAAAAGTATTTCGAG-GCCCACGCTGCCTTCTTTCCCACGGCAGGG-ATCGTCTCGATA 10469 || | | || ||| ||||| | |||||| ||| |||||| || ||||| || Sbjct 574733 GGAGATCCACTT-GAGAGCCCAGTCGGCCTTC-TTCTTGATGCAGGGAATGGTCTCAATG 574676 Query 10470 GCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGGAG 10529 || | ||| || | | ||||| | ||||| || || ||||| |||||| ||| Sbjct 574675 GCGTTGAACAGGTAAGTTCGCTCCTTGGGGTCCTTGATGTAAGTATCAATGAGCAGAGAG 574616 Query 10530 TATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACGTGCCGA 10588 || |||| |||| | |||| | |||| | ||||||| || | ||| Sbjct 574615 TAGGTCTCGGAATGGATGTTCTCCATCATGATCTGGAATCCGTAGAAGCACTTG-GCCTC 574557 Query 10589 GGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCGCT 10648 || || || || | | || | ||||||||| | || || || || Sbjct 574556 AGGAGCCTGAACCTCTCCAGAGAACCGCTCAACCAGGTTCTCGTTGACAATACCGTCAGA 574497 Query 10649 GCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAG-TTTTT 10707 | | |||||||| | || | |||| ||||| ||| || ||| || || Sbjct 574496 GGCAGCAAAGAAAGCCAGCACGTGCGAAATGAAAAACTTCTCGTCGCTGTTGAGCCGGTT 574437 Query 10708 CACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGCAA 10767 | | |||||| ||| ||||| | ||| | | |||||| |||||||||||| || Sbjct 574436 CTC-CCAGTCGCCCATATCCTTGCCGAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCT 574378 Query 10768 CGGCCTTCTTGTACATCTGGAAAATGTCGGGGTACCGGATGGGGAA 10813 ||||||||||||||||||| |||| || ||||| | || ||||| Sbjct 574377 CGGCCTTCTTGTACATCTGCCAAATCTCATGGTACTGAATAGGGAA 574332 >seq2 Length=4150472 Score = 159 bits (176), Expect = 6e-34 Identities = 171/226 (76%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| || | || || |||||||| || |||||||| || || ||| Sbjct 3374809 CCACCTCGGAGTCGCAGAACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 3374868 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| ||||||| || ||||| || ||| Sbjct 3374869 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCCGGGGGA 3374928 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| || |||||||| | || || || Sbjct 3374929 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 3374988 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCA 68460 || | ||||||||| || || || ||||||||||| || || |||| Sbjct 3374989 TCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 3375034 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| || | || || |||||||| || |||||||| || || || Sbjct 3070617 CCACCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 3070558 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || |||| || ||||| || ||| Sbjct 3070557 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 3070498 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 3070497 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 3070438 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | |||||| || || || || ||||||||||| || ||||||||| Sbjct 3070437 TCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATT 3070390 >seq3 Length=2956712 Score = 84.2 bits (92), Expect = 4e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 177072 AGACCGAGAATTTGTTTGATGGCAGTAATCTCGGCGTTGTTAGTAATACTAGACACAGAC 177131 ||||||| ||| | |||||||| ||||||||||| || | || | ||| Sbjct 2329200 AGACCGATAATCTCCTTGATGGCCTGGATCTCGGCGTTCTTCATGATCTGATCGGTGGAC 2329259 Query 177132 GCATCACGGACATTCAGTAGCTTACCACGGAGGGGGAAAATTCCGTAGCGATCCCGACCC 177191 || || ||||| || || | ||||||||| || || || ||| || || || || || Sbjct 2329260 GCTTCTCGGACGTTGAGCATCTTACCACGCAGAGGAAAGGCTCCATACCGCTCTCGTCCA 2329319 Query 177192 ACGACAGCAAGGCCAGCTGTGGCAAGCGTGGCGGCAGAGTCACCCTCTGTCAAAATGAGC 177251 | |||||||| ||||| |||| | || ||| ||||| ||||| |||| ||| ||| Sbjct 2329320 ATCACAGCAAGACCAGCATTGGCCATGGTCATGGCTGAGTCTCCCTCGGTCAGAATCAGC 2329379 Query 177252 GTGCAC 177257 || ||| Sbjct 2329380 GTACAC 2329385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622181114680