Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1 129 1e-24 seq6 104 5e-17 >seq1 Length=4845111 Score = 129 bits (142), Expect = 1e-24 Identities = 133/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || || | ||| ||||| |||| || ||||||||||| || ||||| || || Sbjct 2675900 GGGGAAACCCTCGACCTGGCCGTTGGCAATGGCTCGCATCAGAGTAGACTTACCAGCACC 2675959 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || |||||||||||||| || || ||||| ||| | | | || |||||| Sbjct 2675960 GTTGGGGCCACACAGACCGTATCGTCGGCCTCGCTTGAGACGCAGCTGGGTTCGGTTCAG 2676019 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 ||||| || |||| || |||||||| || ||||| | ||||||||||||||| Sbjct 2676020 CAGAATCTTGGCACCGTAAGCCAGAGAGAACTCACAGTTACACAGATCCTCACC 2676073 >seq6 Length=2655350 Score = 104 bits (114), Expect = 5e-17 Identities = 348/537 (65%), Gaps = 11/537 (2%) Strand=Plus/Plus Query 243196 GAGCGAAACGAGCTTTTCGACGCCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAA 243255 ||||||| | || ||| ||||||| || | |||||| | | || ||||| | Sbjct 574653 GAGCGAACTTACCTGTTCAACGCCATTGAGACCATTCCCTGCATCAAGAAGAAGGCCGAC 574712 Query 243256 TGGGCTCAGAAGTGGCTA---GAACCCG-GTAAATCATTTGCTGAGCGTCTCGTCGCCTG 243311 ||||||| |||||| | || || || | | || || ||||| || |||||| Sbjct 574713 TGGGCTCTCAAGTGGATCTCCGACGACGAGTCTACCTTTGGC-GAGCGACTTATCGCCTT 574771 Query 243312 GGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAA 243371 | |||||| |||||| | || ||||| ||| | |||| || ||||| ||| Sbjct 574772 TGCTGCCGTTGAGGGTATTTTCTTCTCCGGATCTTTTGCCTCCATTTTCTGGCTCAAGAA 574831 Query 243372 CAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCT 243431 |||| | ||||||||||| | || |||||| |||| ||| || ||||| || Sbjct 574832 GCGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATTTCTCGAGATGAGGGTCT 574891 Query 243432 TCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAAC 243491 ||| | || | || | | || | ||| ||||| | ||| | | | | Sbjct 574892 GCACACCGACTTTGCCTGTCTGCTCTTCTCTCACCTCGAGAAC---CGACCCTCCAAGAA 574948 Query 243492 G---GTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGC 243548 | ||| | | |||| || || |||| | || |||| ||| || || || Sbjct 574949 GATTGTCGAGGACGTCATTGTCGAGGCTGTTGGCATTGAGCAGGAGTTCCTTACTGATGC 575008 Query 243549 TATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGT 243608 | | || || | || | || |||||| | | |||||| |||||||||| || || || Sbjct 575009 TCTCCCTTGTGGTCTGCTCGGTATGAACGCCAAGCTCATGCGACAGTACATTGAGTTTGT 575068 Query 243609 AGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTT 243668 |||||||| | | | || ||||| | || || |||||||||| |||||||| Sbjct 575069 GGCCGACCGTCTGCTTGTTGCTCTTGGAAACCCCAAGGTCTACAACTCCACCAACCCCTT 575128 Query 243669 TGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 || ||| |||||| |||||| || || || || ||||||||||| ||||| || Sbjct 575129 TGACTTCATGGAGAACATTTCTCTGGCTGGAAAGACCAACTTCTTCGAGAAGCGAGT 575185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879731517650