Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6 123 3e-23 >seq6 Length=2655350 Score = 123 bits (136), Expect = 3e-23 Identities = 378/572 (66%), Gaps = 18/572 (3%) Strand=Plus/Minus Query 127241 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATAAAATCAAAT 127300 || ||||||||||||||||| ||||| ||| | || || |||||||| || ||||| Sbjct 575185 ACTCGCTTCTCGAAGAAGTTGGTCTTTCCAGCCAGAGAAATGTTCTCCATGAAGTCAAAG 575126 Query 127301 GGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACGATCCGAGACG 127360 ||||| | ||||| | | | || |||| || ||||| || | || Sbjct 575125 GGGTTGGTGGAGTTGTAGACCTTGGGGTTTCCAAGAGCAACAAGCAGACGGTCGGCCACA 575066 Query 127361 TACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGCGCG 127420 |||||||||||| ||| || | ||||||||||| || ||| ||||| || Sbjct 575065 AACTCAATGTACTGTCGCATGAGCTTGGCGTTCATACCGAGCAGACCACAAGGGAGAGCA 575006 Query 127421 TCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTGAATAGTGTCC 127480 || | |||| ||| ||||||| | ||||| || | || | | | | | | | | Sbjct 575005 TCAGTAAGGAACTCCTGCTCAATGCCAACAGCCTCGACAATGACGTCCTCGACAATCTTC 574946 Query 127481 ACCCCAGGTCTATTGCGTAAAGTCTT-GAAGAGTTCCACAG-CAAACTCTTGGTGGAGAC 127538 |||| || | | || |||||| |||| |||| || ||| |||| Sbjct 574945 TTGGAGGGTCGGTT-CTCGAGGTGAGAGAAGAGCAG-ACAGGCAAAGTCGGTGTGCAGAC 574888 Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 |||| || || || ||||| || || |||||| ||| || ||||||||||| ||||||| Sbjct 574887 CCTCATCTCGAGAAATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGACCTCGCTTCT 574828 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 | | ||||||||| | ||| || || |||||||| || ||||| || || || | Sbjct 574827 TGAGCCAGAAAATGGAGGCAAAAGATCCGGAGAAGAAAATACCCTCAACGGCAGCAAAGG 574768 Query 127659 CAAATAGACGCTCGGCAAAGG-AG-CGGGACTTTGTATCAAACCACTTCATCGCCCACTG 127716 | | || |||||| |||||| || | | | | | | | |||||| | ||||| | Sbjct 574767 CGATAAGTCGCTCGCCAAAGGTAGACTCGTCGTCGGA--GATCCACTTGAGAGCCCAGTC 574710 Query 127717 TGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC-TTCAA-AG---AGTTCCTTCTTT 127771 ||||| |||| ||| || || | ||||| || || || || || ||||| || || Sbjct 574709 GGCCTTCTTCTTGATGCAGGGAATGGTCTCAATGGCGTTGAACAGGTAAGTTCGCTCCTT 574650 Query 127772 TCTGATGGATCTTTGATGTACTTATCTATGAG 127803 || || |||||||| |||| ||||| Sbjct 574649 -----GGGGTCCTTGATGTAAGTATCAATGAG 574623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507054292040