Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq6 221 2e-52 seq2 210 3e-49 >seq6 Length=2655350 Score = 221 bits (244), Expect = 2e-52 Identities = 562/848 (66%), Gaps = 13/848 (2%) Strand=Plus/Minus Query 159628 CTTCTTGTATTGCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGA 159687 ||||| ||| | ||||| ||||||||| ||||||||||| || ||| || || Sbjct 575201 CTTCTGGTAGTCAGACACTCGCTTCTCGAAGAAGTTGGTCTTTCCAGCCAGAGAAATGTT 575142 Query 159688 TTCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAG 159747 |||||||| | || ||||| | || ||| ||| || ||| ||||| | || Sbjct 575141 CTCCATGAAGTCAAAGGGGTTGGTGGAGTTGTAGACCTTGGGGTTTCCAAGAGCAACAAG 575082 Query 159748 CAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAG 159807 || | ||| |||||||| || ||||| | ||| ||| ||| || || ||||| Sbjct 575081 CAGACGGTCGGCCACAAACTCAATGTACTGTCGCATGAGCTTGGCGTTCATACCGAGCAG 575022 Query 159808 CCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAAT 159867 | | ||||| || || | || ||||||| |||||| | || || ||| ||||| Sbjct 575021 ACCACAAGGGAGAGCATCAGTAAGGAACTCCTGCTCAATGCCAACAGCCTCG---ACAAT 574965 Query 159868 C---TGCGAGACACGTTCGTACCCCGGCTTGCCCAAAAT-GTGGTCCTTAAACAGGAGGC 159923 | | |||| || | | || | | | | ||| || || || | Sbjct 574964 GACGTCCTCGACAA--TCTT--CTTGGAGGGTCGGTTCTCGAGGTGAGAGAAGAGCAGAC 574909 Query 159924 ACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGC 159983 | ||||||||| |||||| ||||| || ||||| |||| ||||||||| | | | |||| Sbjct 574908 AGGCAAAGTCGGTGTGCAGACCCTCATCTCGAGAAATGAGCTCGTTGGAGAAGGTCAGGC 574849 Query 159984 CCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGA 160043 | ||||||| || ||| |||||||| ||||||| ||||||| ||| || || | Sbjct 574848 CAGGCATGAGACCTCGCTTCTTGAGCCAGAAAATGGAGGCAAAAGATCCGGAGAAGAAAA 574789 Query 160044 TCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGG 160103 | ||||| ||||| ||||| || | || | ||| ||||| | | | | ||| | Sbjct 574788 TACCCTCAACGGCAGCAAAGGCGATAAGTCGCTCGCCAAAGGTAGACTCGTCGTCGGAGA 574729 Query 160104 TCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAA 160163 ||||| | ||||| || |||||||| |||||| || ||| ||| | |||||| | Sbjct 574728 TCCACTTGAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGGTCTCAATGGCGTTGA 574669 Query 160164 ACAA-TCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATT 160222 ||| | || | ||||||| |||||||| |||| |||| ||| ||||| | Sbjct 574668 ACAGGTAAGTTC-GCTCCTTGGGGTCCTTGATGTAAGTATCAATGAGCAGAGAGTAGGTC 574610 Query 160223 TCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATAC 160282 || | || | || || || ||||| || |||||| | | ||||| || | Sbjct 574609 TCGGAATGGATGTTCTCCATCATGATCTGGAATCCGTAGAAGCACTTGGCCTCAGGAGCC 574550 Query 160283 TGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCA 160342 || ||||| | ||||| | | |||| || | || || | ||||| | ||| ||| Sbjct 574549 TGAACCTCTCCAGAGAACCGCTCAACCAGGTTCTCGTTGACAATACCGTCAGAGGCAGCA 574490 Query 160343 AAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAG 160402 |||||||||| |||||| || |||||| ||||||| ||||||| | || |||||| Sbjct 574489 AAGAAAGCCAGCACGTGCGAAATGAAAAACTTCTCGTCGCTGTTGAGCCGGTTCTCCCAG 574430 Query 160403 TGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTT 160462 | || || | | | | ||||| ||| || ||| |||| | ||||| || | Sbjct 574429 TCGCCCATATCCTTGCCGAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGGCCTTC 574370 Query 160463 TTGTACAT 160470 |||||||| Sbjct 574369 TTGTACAT 574362 >seq2 Length=4150472 Score = 210 bits (232), Expect = 3e-49 Identities = 342/486 (70%), Gaps = 10/486 (2%) Strand=Plus/Minus Query 203849 GTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTTAGG 203908 |||||||| |||| | |||||| | || ||| ||| |||||||| |||||||| || Sbjct 326334 GTGAACTGGATGGGGGCAGCGGCAGCCATGGTTCGCAGGTAGTACATACCGGTCTTGAGA 326275 Query 203909 CCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATG 203968 ||||||| ||| ||||| | ||||||||||| || || | || | |||| || ||| Sbjct 326274 CCCTTCTTCCAGCCGTAGAAGTGCATGGAAGTGAGCTTACCCATGGTGGGCTCCTTGATG 326215 Query 203969 TGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATA 204028 |||||||| || |||||| ||||| ||||| || | || || |||||||| | ||| Sbjct 326214 TGAATGTTGAGGGACTGGGACTGGTCAATGAAGGGAGATCGGTCGGCGGCCATCTCGATG 326155 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTTGAGGCACA 204088 || |||||| |||||||||||||| |||||| ||| || || | | || || | Sbjct 326154 ATTCGCTTCTGGGAAATCTCCCACACGGTCTTGTACAGCTCCTTGATCTCCTGGGGGATG 326095 Query 204089 TCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTC---TCATCCTCGTCTCCTC 204144 | | | || ||| | || ||||||||||| | | || || || | ||||| | Sbjct 326094 T-TGGGGATGTTCTGCACGGATCCGTTGTCGGCGACAATTCGGTTCTTCATAGTCTCGT- 326037 Query 204145 CCCCCACATGCCCAACCTGATC-AGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGT 204203 ||| | | || |||| | | || ||| | || |||||||| ||||| || | Sbjct 326036 --TCCAGA-GACCGACCTCAACAAGGTCCTTGAGAAGCCAGGGGTTGACAATCTGGAACT 325980 Query 204204 CTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGT 204263 | |||| || || | ||| | | | | |||| |||| | || ||||| ||||||| Sbjct 325979 CACCGGCAAGAACTCGTCGAGAGTAAATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGA 325920 Query 204264 TGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCA 204323 ||||| |||||||| ||| || |||||||| ||||| | ||||| ||||| |||| Sbjct 325919 AGCCGAGAATCTGAGAGGTAGAAGCAGTGGGCATAGGAGCGACCAGCAGAGAGTTTCGCA 325860 Query 204324 CACCGT 204329 ||||| Sbjct 325859 GACCGT 325854 Score = 181 bits (200), Expect = 2e-40 Identities = 565/855 (66%), Gaps = 20/855 (2%) Strand=Plus/Minus Query 204923 cccACATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATT 204982 |||| | || |||||| ||||| ||||| |||||||||||||| | |||||| || || Sbjct 325335 CCCAGGTTCTTCTGGTTGGACTTTCGGTTGCAGGAGTCCTTGTAGAGCATGAAGGGGTTT 325276 Query 204983 CCGTTCTCCATCTGAGA-TCGCAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTT 205041 ||| ||| |||| | ||| ||||||||| ||||| | | || | || || Sbjct 325275 CCGGACTCGGTCTGGCAGTCG-AGAATGTGGTACCACAGCTTCTGGGCGGGGA--TGGTT 325219 Query 205042 CA-CGTACA--TCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTA 205098 | || | ||||| | |||||| | ||||||| | || || |||||| Sbjct 325218 CGTCGGCCTCGTCCCTCTCG-CTCGTACTGCTCGTACAGCTTCTTGAACTCGTCACCGTA 325160 Query 205099 CACGTCCATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACAT-CTGATCGTCTT 205157 ||||| || || || || | ||||| ||||| || | |||| | | || || Sbjct 325159 GACGTCGTCAAGACCGGGGCACTCGTTGGGGCACATGAGGGTCCACTCGCCGTTCTGCTC 325100 Query 205158 TCACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAA 205217 || | |||||| ||||||||| ||||||||| | ||||| || ||||| | | Sbjct 325099 G-ACTCGCTCCATGAACAGGTCGGGAATCCACAGGGCCAGGAACAGGTCTCGGGCTCGGA 325041 Query 205218 TTCCGTCGTCTCCAAGGTTCTTTTTCAAGTC-CAGCCAAGCCGCA-ATGTCGGCGTGCCA 205275 | | || | ||| |||||||| || || ||| || || | |||||| ||||||| Sbjct 325040 TCTCCTCCTTTCCGTGGTTCTTTCGCAGCTCGCAG--AACTCGAAGATGTCGTCGTGCCA 324983 Query 205276 CGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCG 205335 ||||| | ||| ||| | || || || | |||||| ||||||||||| || || Sbjct 324982 AGGCTCAAGGTACATGGCAAAGGCTCCGGGTCGCTTGTTACCACCCTGGTCAACGTATCG 324923 Query 205336 AGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCT 205395 | | |||| | ||||| ||||| ||||| | |||||||| ||| ||||| |||| Sbjct 324922 GGCAGTGTTGTTGTAGACTCGGAGCATGGGCACGATACCGTTGGAGGTACCGTTGGTGCC 324863 Query 205396 GTTGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACA 205455 | ||| ||||| || | | |||| ||||| || || || || | | | Sbjct 324862 GGCAATGTAGGAGCCGGTGGCTCGAATGTTGTGGATGGAGAGACCGATACCTCCGGCAGA 324803 Query 205456 CTTGGCGATCTGGGCGCA-CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCG 205514 ||||| ||| | || || ||||| || || ||||||||| ||||||| |||||| Sbjct 324802 CTTGGAGATGAGAGCACAGGTCTTG-AGGGTATCGTAGATGCCGTCGATGGAGTCGTCCT 324744 Query 205515 CCAGTGTCACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCG 205574 || | || || | ||||||| || || || | ||| || |||| | |||| | Sbjct 324743 TCATGTTGACGAGGAAACACGAAGACATCTGGGGCTGGGGGGTTCCAGCGTTGTAGAGAG 324684 Query 205575 TGGGGCTGGCGTGGCTGAAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCT 205634 ||||| |||||| ||||| ||||| | || | |||||||||| | | | Sbjct 324683 TGGGGGAAGCGTGGGTGAAGTACTTCTGGGACATGTAGTTGTAGGTCTCAATGGCCCGGG 324624 Query 205635 CCAGATCGAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTC-- 205692 | | | | ||||| ||||| | | || | ||||| | || || |||| ||| Sbjct 324623 CAATGTTGTCACCGTGGATACCGACAGAGACTCGCATGATCATCTGCTGGGGTCGCTCGG 324564 Query 205693 CATCACCCTCTCGTTCACCTTGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAA 205752 || || ||| |||| || ||||| || |||| ||| ||||| || | |||| | Sbjct 324563 CAACA-GCTC-CGTTGACTCGAAGCAGGTATGCTCGCTCCAGGGTCTTGAAGCCAAAGTA 324506 Query 205753 GTTGAAGGTGTAGTC 205767 |||| ||||| |||| Sbjct 324505 GTTGTAGGTGAAGTC 324491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795155011150640