Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1 156 1e-32 seq2 147 5e-30 >seq1 Length=4845111 Score = 156 bits (172), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||||| ||||| || |||||||| |||||||| |||| ||||||||| | || ||| Sbjct 2007187 TCGAAGTCGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 2007246 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||||||| |||||||| || ||||| ||||| |||||||||||||| |||||| Sbjct 2007247 TCGTCCATCTTCGAGCTGCTTACCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATTCC 2007306 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||||||||| ||| || || | |||||| | | || || || | Sbjct 2007307 CTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACCTCAAG 2007366 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || ||||| ||||| || Sbjct 2007367 GGTAATGGTCTTTCCAGTGAGGGTCTTCACGAAAATCTG 2007405 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||||| ||||| || || || || |||||||| |||| |||||| |||| || ||| Sbjct 2006959 TCGAAGTCGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAGAGT 2007018 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||| || |||||||| ||||||||||| || |||||||||||||| |||||| Sbjct 2007019 TCGTCCATCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCC 2007078 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||||||||| ||| ||| || | |||||| | | || || || | Sbjct 2007079 CTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCAGAAGACTCAACCTCGAG 2007138 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||||| || ||||| || || Sbjct 2007139 GGTGATGGTCTTTCCAGTCAGAGTCTTGACAAAGATCTG 2007177 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| |||||||| || || || |||||||| |||| ||||||||||| || ||| Sbjct 2007415 TCGGAGTCGGAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGT 2007474 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||| || || ||||||||||| ||||| ||||| |||||||||||||| ||||| Sbjct 2007475 TCGTCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGGATTCC 2007534 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||||||||| ||| ||| || | |||||| | | || || || | Sbjct 2007535 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGACTCGACCTCAAG 2007594 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || || || || || || Sbjct 2007595 GGTGATAGTCTTGCCGGTCAGGGTCTTGACGAAGATCTG 2007633 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| || |||||||||||||| || ||||| |||| ||| ||||||| | || Sbjct 2006536 TCGGAGTCGGAGCACAAGGTGGAGAGTGGATTCCTTCTGGATGTTATAGTCAGAAAGGGT 2006595 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||| || || |||||||| ||||||||||| || |||||||||||||| || || Sbjct 2006596 TCGTCCGTCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATACC 2006655 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| ||||| ||| ||| || | |||||| | | || || || | Sbjct 2006656 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCAACCTCAAG 2006715 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||||| || ||||| || || Sbjct 2006716 AGTGATAGTCTTTCCAGTCAGAGTCTTGACAAAGATCTG 2006754 Score = 114 bits (126), Expect = 3e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| ||||| || |||||||| |||||||| || | ||||||||| | | || Sbjct 2007643 TCGGAGTCGGAGGACCAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGT 2007702 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| || ||||||||||| ||||||||||| |||||||||||||| ||||| Sbjct 2007703 TCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGGTCCGGGGGGATTCC 2007762 Query 199528 TTCTCGCTCCTGAATCTT 199545 || ||||||||||| Sbjct 2007763 CTCCTTGTCCTGAATCTT 2007780 Score = 89.7 bits (98), Expect = 1e-12 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 200934 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 200993 ||||||||||||||| |||||| | || |||||| | ||| || | ||||||||| |||| Sbjct 2007055 ACTTATCTTCGCCGGTAAGCAGCTTGAGGATGGACGAACTCTGTCTGATTACAACATCCA 2006996 Query 200994 GAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 ||| ||||| || ||||| || || | |||||||| Sbjct 2006995 GAAGGAGTCCACCCTTCATCTCGTCCTCCGACTTCGA 2006959 Score = 86.0 bits (94), Expect = 1e-11 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 200934 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 200993 ||| || ||||| || |||||| | ||||||||| | ||| || |||| |||||| |||| Sbjct 2007283 ACTCATTTTCGCTGGTAAGCAGCTCGAAGATGGACGAACTCTGTCCGACTACAACATCCA 2007224 Query 200994 GAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 ||| ||||||||||| || || || | |||||||| Sbjct 2007223 GAAGGAGTCTACTCTCCATCTGGTCCTTCGACTTCGA 2007187 >seq2 Length=4150472 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| ||| || || |||||||| |||||||| |||| ||||||||||| | || Sbjct 3070612 TCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGT 3070553 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || || || |||||||| ||||||||||| || |||||||||||||| |||||| Sbjct 3070552 TCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCC 3070493 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| ||||| ||| ||| |||| |||||| | | || || || | Sbjct 3070492 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 3070433 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||| || || || || |||||||| || Sbjct 3070432 GGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTG 3070394 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| ||| ||||| |||||||| |||||||| |||| ||||||||||| | ||| Sbjct 3374814 TCGGAGTCGCAGAACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGT 3374873 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || || || |||||||| |||||||| ||||| |||||||||||||| ||| || Sbjct 3374874 TCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATGCC 3374933 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| ||||| ||| ||| || | |||||| | | || || || | Sbjct 3374934 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAG 3374993 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || || ||||| ||||| Sbjct 3374994 GGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTG 3375032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921313006273