Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2 147 2e-30 seq1 109 6e-19 >seq2 Length=4150472 Score = 147 bits (162), Expect = 2e-30 Identities = 163/215 (76%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || ||||| | || |||||| ||||| |||||||| || ||||| || || Sbjct 3374821 CGCAGAACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTTCGGCCG 3374880 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || |||||||||||||||||||| || | ||||||||||| | || | || ||||||| Sbjct 3374881 TCCTCGAGCTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 3374940 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| ||||| ||| | | | |||||| || ||||| || | ||||| Sbjct 3374941 TCCTGGATCTTGGACTTGA-CGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGAT 3374999 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCA 46592 ||| ||||| || || || || ||||||||||||| Sbjct 3375000 GGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 3375034 Score = 120 bits (132), Expect = 3e-22 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || ||||| | || |||||| ||||| |||||||| || || || || || Sbjct 3070605 CGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCG 3070546 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||||||||| |||||||| || | ||||||||||| | || | | ||||||| Sbjct 3070545 TCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTG 3070486 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| ||||| ||| | | | |||||| || ||||| || | ||||| Sbjct 3070485 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 3070427 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTT 46595 || || || || || || || ||||| || ||||||| Sbjct 3070426 AGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 3070389 >seq1 Length=4845111 Score = 109 bits (120), Expect = 6e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| || ||||| || || || || |||| || |||||||| |||||||| Sbjct 2006567 TCCTTCTGGATGTTATAGTCAGAAAGGGTTCGTCCGTCCTCAAGCTGCTTACCGGCGAAG 2006626 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||| | || | | |||||||||| |||||| ||||| ||| Sbjct 2006627 ATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGTT 2006685 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| || || || || | ||||| || || || ||||| || || || Sbjct 2006686 GTCAATGGTGTCGGAGGACTCAACCTCAAGAGTGATAGTCTTTCCAGTCAGAGTCTTGAC 2006745 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 2006746 AAAGATCTGCAT 2006757 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || ||||| || | || || |||||||| |||||||| Sbjct 2006989 CTCCTTCTGGATGTTGTAATCAGACAGAGTTCGTCCATCCTCAAGCTGCTTACCGGCGAA 2007048 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | |||||||||| ||||| ||||| ||| Sbjct 2007049 GATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAATCTTAGACTTGA-CGT 2007107 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || || || || | |||||||| || || ||||| || || | Sbjct 2007108 TGTCAATGGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTTCCAGTCAGAGTCTTGA 2007167 Query 46581 CAAAGATTTGCAT 46593 ||||||| ||||| Sbjct 2007168 CAAAGATCTGCAT 2007180 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||| | ||| |||||| ||||| ||||||||||| ||||| || | || ||| Sbjct 2007200 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGTCCATCTTCG 2007259 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || ||||| || | ||||||||||| | || | | |||||||||| Sbjct 2007260 AGCTGCTTACCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGA 2007319 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| | | | |||||| || || || || | || ||||| || Sbjct 2007320 ATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTT 2007379 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || || || ||||| Sbjct 2007380 CCAGTGAGGGTCTTCACGAAAATCTGCAT 2007408 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || ||||| || |||| || |||||||| || ||||| Sbjct 2007445 CTCCTTCTGGATGTTGTAGTCAGACAGAGTTCGTCCGTCCTCAAGCTGCTTTCCAGCGAA 2007504 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | |||||||||| ||||| ||||| ||| Sbjct 2007505 AATGAGTCGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGAATCTTGGACTTGA-CGT 2007563 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || || || || | ||||| || ||||| ||||| || || | Sbjct 2007564 TGTCAATGGTGTCAGAAGACTCGACCTCAAGGGTGATAGTCTTGCCGGTCAGGGTCTTGA 2007623 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 2007624 CGAAGATCTGCAT 2007636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238265755880