Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq6 282 4e-71 seq2 132 5e-26 seq1 122 9e-23 >seq6 Length=2655350 Score = 282 bits (312), Expect = 4e-71 Identities = 593/876 (68%), Gaps = 11/876 (1%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || ||||| ||| |||||| | ||| || || ||||||||| Sbjct 575179 TTCTCGAAGAAGTTGGTCTTTCCAGCCAGAGAAATGTTCTCCATGAAGTCAAAGGGGTTG 575120 Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744 | | ||||||| ||||| | || | || ||||| | ||||||||| ||||| Sbjct 575119 GTGGAGTTGTAGACCTTGGGGTTTCCAAGAGCAACAAGCAGACGGTCGGCCACAAACTCA 575060 Query 132745 ATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACC-GGCAGCGCTTCGG 132802 ||||| || |||| | || || || | || ||||||| ||| || || || || | Sbjct 575059 ATGTACTGTCGCATGAGCTTGGCG-TTCATACCGAGCAGAC-CACAAGGGAGAGCATCAG 575002 Query 132803 TGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGC 132862 | || || ||||| ||| | || || ||| | || ||| || | | | Sbjct 575001 TAAGGAACTCCTGCTCAATGCCAACAGCCTCGACAATGACGTCCTCGACAATCTTCTTGG 574942 Query 132863 TCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGT 132922 || || | | | | || ||| | || || ||||||||| |||| ||||| | Sbjct 574941 AGGGTCGGTTCTCGAGGTGAGAGAAGAGCAGACAGGCAAAGTCGGTGTGCAGACCCTCAT 574882 Query 132923 CCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCC 132982 | | |||||||| |||||| ||| |||| ||| |||||||| || || || ||||||| Sbjct 574881 CTCGAGAAATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGACCTCGCTTCTTGAGCC 574822 Query 132983 AAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCA 133042 | || |||| ||| ||| || || ||||| | ||||| ||||| || || || | | Sbjct 574821 AGAAAATGGAGGCAAAAGATCCGGAGAAGAAAATACCCTCAACGGCAGCAAAGGCGATAA 574762 Query 133043 GGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTT 133102 | |||||||| || || | || | | || |||||| || ||||| |||||||| | Sbjct 574761 GTCGCTCGCCAAAGGTAGACTCGTCGTCGGAGATCCACTTGAGAGCCCAGTCGGCCTTCT 574702 Query 133103 CTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAAC 133162 |||| ||| || || || || |||||||| |||| | | ||| || | || | Sbjct 574701 TCTTGATGCAGGGAATGGTCTCAATGGCGTTGAACAG--GTAAGTTCGCTCCTTGGGGTC 574644 Query 133163 GC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGAT 133220 | ||| || || ||||| || || | || || || | ||||||||| ||| Sbjct 574643 CTTGATGTAAGTATCAATGAGCAGAGAGTAGGTCTCGGAATGGATGTTCTCCATCATGAT 574584 Query 133221 TTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGAC 133280 || || ||||| |||||| ||||| |||| || ||| || ||| ||||| || Sbjct 574583 CTGGAATCCGTAGAAGCACTTGGCCTCAGGAGCCTGAACCTCTCCAGAGAACCGCTCAAC 574524 Query 133281 CAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAA 133340 ||| || |||||||| || ||||| ||| || || || |||||||||||| ||||| Sbjct 574523 CAGGTTCTCGTTGACAATACCGTCAGAGGCAGCAAAGAAAGCCAGCACGTGCGAAATGAA 574464 Query 133341 ATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCAC 133397 | ||||| | ||| | || ||||||||||| | | |||||| || || | Sbjct 574463 AAACTTCTCGTCGCTGTTGAGCCGGTTCTCCCAGTCGCCCATATCCTTGCCGAGATCAAT 574404 Query 133398 CTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATA 133457 ||||||| ||||||| || || |||||||| || |||||||| ||| || || || Sbjct 574403 CTCCTCGGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACATCTGCCAAATCTCATGGTA 574344 Query 133458 TTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493 || || || || | ||||||||| ||| ||| || Sbjct 574343 CTGAATAGGGAAGAGCACAAACCGTCGGTTGTTCTC 574308 >seq2 Length=4150472 Score = 132 bits (146), Expect = 5e-26 Identities = 160/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304 ||||||| || || || || || || ||||| ||||||||| |||| || ||| | ||| Sbjct 3375034 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCG 3374975 Query 38305 ACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | |||| | || || |||| ||||| ||||| |||||| | ||||| Sbjct 3374974 ACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 3374916 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||||| ||| ||||| ||||| || |||| || || ||| ||||||||| Sbjct 3374915 CAGCGACTCATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTCTCTGACTACAAC 3374856 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || ||| | || ||||| Sbjct 3374855 ATCCAGAAGGAGTCCACTCTCCATCTTGTTCTGCG 3374821 Score = 111 bits (122), Expect = 2e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38242 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCA 38301 ||||||| || || || || || || || || || || |||||| | || || ||| | Sbjct 3070389 AAATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTT 3070448 Query 38302 CCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | |||| | || || |||| ||||| |||||||||||| | ||| Sbjct 3070449 CCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAC 3070507 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| || || ||||| || |||| || ||||| |||||| Sbjct 3070508 CAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTAC 3070567 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| ||||| | || || ||| | || ||||| Sbjct 3070568 AACATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCG 3070605 >seq1 Length=4845111 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || ||||| ||| | || |||||| || || Sbjct 2007408 ATGCAGATTTTCGTGAAGACCCTCACTGGAAAGACCATTACCCTTGAGGTCGAGTCCTCC 2007349 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || || | ||||| |||||||||||| | ||||| Sbjct 2007348 GACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAG 2007289 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||||| ||| || || ||||| || || | || || || |||||||||| Sbjct 2007288 CAGCGACTCATTTTCGCTGGTAAGCAGCTCGAAGATGGACGAACTCTGTCCGACTACAAC 2007229 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || ||| |||| || || Sbjct 2007228 ATCCAGAAGGAGTCTACTCTCCATCTGGTCCTTCG 2007194 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| || |||||| | || |||||| | | Sbjct 2007636 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACTATCACCCTTGAGGTCGAGTCTTCT 2007577 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || || | ||||| |||||||| ||| | ||||| Sbjct 2007576 GACACCATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGAATCCCCCCGGACCA 2007518 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||||| ||| || || ||||| || |||| || || || |||||||| Sbjct 2007517 GCAGCGACTCATTTTCGCTGGAAAGCAGCTTGAGGACGGACGAACTCTGTCTGACTACAA 2007458 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || ||| | || || || Sbjct 2007457 CATCCAGAAGGAGTCCACCCTTCATCTTGTCCTCCG 2007422 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || ||||||||| |||| || ||| | | Sbjct 2007180 ATGCAGATCTTTGTCAAGACTCTGACTGGAAAGACCATCACCCTCGAGGTTGAGTCTTCT 2007121 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || || | ||||| |||||||||||| | ||||| Sbjct 2007120 GACACCATTGACAACG-TCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCA 2007062 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| || || ||||| || || | || || || || ||||| Sbjct 2007061 GCAGCGACTTATCTTCGCCGGTAAGCAGCTTGAGGATGGACGAACTCTGTCTGATTACAA 2007002 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || ||| | || || || Sbjct 2007001 CATCCAGAAGGAGTCCACCCTTCATCTCGTCCTCCG 2006966 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| |||||||| ||| | ||||| ||||| ||||| | ||| || || ||||| || Sbjct 2007771 GACAAGGAGGGAATCCCCCCGGACCAGCAGCGACTCATCTTCGCTGGAAAGCAGCTTGAG 2007712 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | || |||||| |||||||||||| || ||||| | || || ||| |||| || Sbjct 2007711 GATGGCCGAACCCTCTCCGACTACAACATTCAGAAGGAGTCCACTCTCCATCTGGTCCTC 2007652 Query 38457 CG 38458 || Sbjct 2007651 CG 2007650 Score = 86.0 bits (94), Expect = 6e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 107663 CTTGAGGTTGCCCAGGTCGCCGACGTGCCTGATCTCGG-CGTCGGGCGCGCCGTGGTCGC 107721 ||||| |||||| ||||| || ||||| | | || | ||| ||| || ||||||| Sbjct 2763690 CTTGACGTTGCCGAGGTCTCCAACGTGTC-GCTCAGTGTCGTTGGGGGCTCCGTGGTTCT 2763632 Query 107722 GCTTCGTCGGGTTGAAATGCTCGCCGGCCGACGTGCAGCCGTTGCTCGCGTCGCCGAACT 107781 ||| |||||||| || |||||| || |||||||||||| | ||| || |||| Sbjct 2763631 TCTTGAAGGGGTTGAAGTGGGGGCCGGCGGAGGTGCAGCCGTTGGTGTTGTCTCCAAACT 2763572 Query 107782 CGTGCACGTGGAAGCC 107797 |||||||||||||||| Sbjct 2763571 CGTGCACGTGGAAGCC 2763556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172681208960