Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2 264 1e-65 seq6 154 2e-32 seq1 113 5e-20 seq5 102 1e-16 >seq2 Length=4150472 Score = 264 bits (292), Expect = 1e-65 Identities = 1177/1833 (64%), Gaps = 77/1833 (4%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || || || |||||||| || |||||||| |||||| |||| | ||||| |||| | Sbjct 326301 CGCAGGTAGTACATACCGGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATGGAAGTG 326242 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 || || | || || || || | ||| | ||||| ||||| || ||||| Sbjct 326241 AGCTTACCCATGGTGGGCTCCTTGATGTGAATGTTGAGGGACTGGGACTGGTCAATGAAG 326182 Query 109528 CGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTG 109587 || || || || ||||| |||||||| | ||| ||| ||| ||||| || |||||| Sbjct 326181 GGAGATCGGTCGGCGGCCATCTCGATGATTCGCTTCTGGGAAATCTCCCACACGGTCTTG 326122 Query 109588 TACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTC 109647 |||| | |||||| || | ||| |||| |||||| || | || || | Sbjct 326121 TACAGCTCCTTGATCTCCTGGGGGATGTTGGGGATGTTCTGCACGGATCCGTTGTCGGCG 326062 Query 109648 ACCATGAGATCCTTCAT---CTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACA 109704 || || | | |||||| ||| ||| ||||||||||||| || || | | | Sbjct 326061 ACAATTCGGTTCTTCATAGTCTCGTTC---CAGAGACCGACCTCAACAAGGTCCTTGAGA 326005 Query 109705 AGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTC 109764 || |||||| | || ||||| ||||| ||||| ||| ||||| | Sbjct 326004 AGCCAGGGGTTGACAATCTGGAACTCACCGGCAAGAACTCGTCGAGAGTAAATGTTGGAG 325945 Query 109765 GTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATG 109824 ||||| || ||||| ||||| ||| ||| || || || | || ||||| |||||||| Sbjct 325944 GTGTAAGGCTCGAAGCACTCGTTGAAGCCGAGAATCTGAGAGGTAGAAGCAGTGGGCATA 325885 Query 109825 GGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTG----C 109880 ||||| | || ||| |||||| ||||| | | || || || | ||| | Sbjct 325884 GGAGCGACCAGCAGAGAGTTTCGCAGACCGTGC---TTGACAACCTTGGAC-TTGAGGTC 325829 Query 109881 GTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTAC 109940 |||||| || | || | | | | | | | |||||| || || || | Sbjct 325828 GTCCCACTCCCA--GAGCTCGG----TGGGGGAAACGTTCCACATGTCGAACTGCAGGTC 325775 Query 109941 ACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTC 110000 |||| | |||||||| |||| ||| ||||||| | ||||| | ||||| ||| Sbjct 325774 TCCCTTGGAGGCAGGAGAGCCCTGGAAGGTCTCGTAGGCACCCTCCTCAATGGCCATCTC 325715 Query 110001 GGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATG-------AGCATTCA 110053 || ||||| | || | || || || ||||| || || || ||| ||| Sbjct 325714 CATAGAGGCCTCGACGGCTCCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGC-TTCT 325656 Query 110054 TGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGA-ATAAACACATCCGCTAGA 110112 || | ||| || | || ||||| |||| || || || || ||| || ||| Sbjct 325655 TG------GCCTCGTCGGACTCAAAGGGGAGACG-CAGAGCCATGAAGGTATCAGCCAGA 325603 Query 110113 CCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCT--- 110169 ||||| ||||| ||| | ||||| || || |||||| || | || | | || Sbjct 325602 CCCTGGACACCCAGAGCGATGGGTCGGTGTCGCATGTTGGA-CTTCTTG--GCCTCGGGA 325546 Query 110170 ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGT---CTTCGTG 110226 |||||||| |||| |||||||||| ||||| || ||| |||| | ||| | Sbjct 325545 ACGGGGTAGTAGTTTCGGTCGATGATGGCGTTGAGGTT--TCG-CACAATGACCTTGGCA 325489 Query 110227 ATTTCATGGAGTTTGTCGTAATCG---AACGTTTTCGTCTCCTT---ATTGACATATTTG 110280 || ||||| || || | | | ||| |||| || ||||| | | | || | || Sbjct 325488 ATATCATGCAGCTTCTTGAAGTCGTAGAACGAGTTGGTCTCGTCTCGAGTCACGAAAGTG 325429 Query 110281 GGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAA 110340 || |||||||| || || || ||||| || | | ||| || | ||| || | | Sbjct 325428 GGCAGAGCAATGGAGGCCAGGTTGCAGACGGCAACCTCATCGGGAGAAGAGTACTCGACA 325369 Query 110341 ATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAG 110400 || || ||||| ||||||| ||| ||| |||| ||||||||| || || || | Sbjct 325368 ATCTCGCAACACAGGTTGGAAGACTTGATGGTTCCCAGGTTCTTCTGGTTGGACTTTCGG 325309 Query 110401 TTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATG 110460 ||||| | ||||| ||||||||| | ||| | || | || ||||| | | ||||||| Sbjct 325308 TTGCAGGAGTCCTTGTAGAGCATGAAGGGGTTTCCGGACTCGGTCTGGCAGTCGAGAATG 325249 Query 110461 GCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGA-GACCTTCCTCCTCGTACT 110518 | ||| | | || | |||||||| ||| ||| || | || || |||||||| Sbjct 325248 TGGTACCACAGCTTCTG-GGCGGGGATGGTT-CGTCGGCCTCGTCCCTCTCGCTCGTACT 325191 Query 110519 TGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGG 110578 ||||| | || || || | ||||| || || |||||| || || || Sbjct 325190 GCTCGTACAGCTTCTTGAACTCGTCACCGTAGACGTCGTCAAGACCGGGGCACTCGTTGG 325131 Query 110579 GACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCC 110638 | || | ||||| ||| | || || ||| || | || |||||||||||| ||||||| Sbjct 325130 GGCACATGAGGGTCCACTCGCCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGAATCC 325071 Query 110639 ACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCT 110698 ||| ||| ||| ||||| ||| || ||| || | || ||||| || |||| Sbjct 325070 ACAGGGCCAGGAACAGGTCTCGGGCTCGGATCTCCTCCTTTCCGTGGTTCTTTCGCAGCT 325011 Query 110699 CCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC----- 110753 | | || || | ||| || |||||| || || || || | || | || ||| Sbjct 325010 CGCAGAACTCGAAGATGTCGTCGTGCCAAGGCTCAAGGTACATGGCAAAGGCTCCGGGTC 324951 Query 110754 -CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAG 110812 ||| || |||| |||| ||| || || || ||| ||| |||| | |||||| | Sbjct 324950 GCTTGTTACCACCC---TGGTCAACGTATCGGGCAGTGTTGTTGTAGACTCGGAGCATGG 324894 Query 110813 GAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGT 110872 | | || || | ||| ||| || || || ||| ||| |||| ||||||| Sbjct 324893 GCACGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAGGAGCCGGTGGCTCGAATGT 324834 Query 110873 CGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC-TCTGTGAGT 110931 |||||| | ||| ||||| || || |||| || | ||||| ||| |||| Sbjct 324833 TGTGGATGGAGAGACCGATACCTCCGGCAGACTTGGAGATGAGAGCACAGGTCT-TGAGG 324775 Query 110932 GTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATC 110991 ||| | || || || || || || || |||| || | || || || ||||||||| Sbjct 324774 GTATCGTAGATGCCGTCGATGGAGTCGTCCTTCATGTTGACGAGGAAACACGAAGACATC 324715 Query 110992 TGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCT-TG 111050 || || | || ||||| || ||| |||| || || | || || |||| || | || Sbjct 324714 TGGGGCTGGGGGGTTCCAGCGTTGTAGAGAGTGGGGGAAGCGTGGGTGAA-GTACTTCTG 324656 Query 111051 GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGC 111110 |||||| | |||||| || || | || || | | | |||||| ||||| | | Sbjct 324655 GGACATGTAGTTGTAGGTCTCAATGGCCCGGGCAATGTTGTCACCGTGGATACCGACAGA 324596 Query 111111 AACTCGCATGAACATATATTGAGGCGTTTCG--ATTAGCTTTCCATCAACACGCTGAAGG 111168 |||||||||| ||| | || || ||| | ||| ||| | || || | ||| Sbjct 324595 GACTCGCATGATCATCTGCTGGGGTCGCTCGGCAACAGC--TCCGTTGACTCGAAGCAGG 324538 Query 111169 TA-ACTCTTCTCTAGGGTCTTGAGACCAAAGTA 111200 || ||| ||| |||||||||| |||||||| Sbjct 324537 TATGCTC-GCTCCAGGGTCTTGAAGCCAAAGTA 324506 >seq6 Length=2655350 Score = 154 bits (170), Expect = 2e-32 Identities = 404/608 (66%), Gaps = 45/608 (7%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 |||||| ||| | ||| |||||||| || ||||| ||| | || || ||||| ||||| Sbjct 575194 TAGTCAGACACTCGCTTCTCGAAGAAGTTGGTCTTTCCAGCCAGAGAAATGTTCTCCATG 575135 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGA--TTGGTGGTT----GACCAACTTGTTTCAGA 119321 |||||||| || || ||||||| ||| |||| | || || |||| || Sbjct 575134 AAGTCAAAGGGGTTGGTGGAGTTGTAGACCTTGGGGTTTCCAAGAGCAACA------AGC 575081 Query 119322 AGACGATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGA 119381 ||||| |||| ||| |||| || || | ||| | | |||||||| | ||| Sbjct 575080 AGACGGTCGGCCACAAACTCAATGTACTGTCGCATGAGCTTGGCGTTCATACCGAGCAGA 575021 Query 119382 TTACACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATG 119441 ||| ||||||||||| | ||| | || ||| || | ||||| || || ||| Sbjct 575020 CCACAAGGGAGAGCATCAGTAAGGAACTCCTGCTCAATGCCAACAGCCTCG---ACAATG 574964 Query 119442 GAGT----GAATAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTAC--- 119494 || || | |||| | || ||| ||| ||| ||| | | | || | Sbjct 574963 ACGTCCTCGACAATCTTCT-TGGAGGGTCGGTT-CTC--GAGGTGAGAGAAGAGCAGACA 574908 Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || || ||||| ||||| |||||||| || |||| || || Sbjct 574907 GGCAAAGTCGGTGTGCAGACCCTCATCTCGAGAAATGAGCTCGTTGGAGAAGGTCAGGCC 574848 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||||||| |||| ||||| ||||| || |||| |||| ||| || ||||| || Sbjct 574847 AGGCATGAGACCTCGCTTCTTGAGCCAGAAAATGGAGGCAAAAGATCCGGAGAAGAAAAT 574788 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTC------ 119668 ||||| || || || |||| || ||||| || |||||| ||||| ||| Sbjct 574787 ACCCTCAACGGCAGCAAAGGCGATAAGTCGCTC-GCCAAAGGT--AGACTCGTCGTCGGA 574731 Query 119669 GAACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTC 119728 || ||||||||||||||||| |||||| || |||||||| | || | ||||| | Sbjct 574730 GATCCACTTGAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGGTCTCAATGGCGTT 574671 Query 119729 GAA-----AAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAG 119783 ||| ||||| || || | ||||| || || |||||||||| |||| Sbjct 574670 GAACAGGTAAGTTCGCTCCTTGGGG-----TCCTTGATGTAAGTATCAATGAGCAGAGAG 574616 Query 119784 TAGGTCTC 119791 |||||||| Sbjct 574615 TAGGTCTC 574608 Score = 140 bits (154), Expect = 4e-28 Identities = 335/501 (67%), Gaps = 27/501 (5%) Strand=Plus/Plus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 ||||||||| || || || || |||||| |||||||| |||| ||||| ||| |||| Sbjct 698105 ATCGAAACGTCCGGGTCGCAGAAGAGCAGGATCAAGAACATCGGGTCGGTTAGTACCGGC 698164 Query 11565 AATGACTACAAT---GCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTT 11621 | || |||| | ||| | ||||| |||||||| || || |||||||| Sbjct 698165 CAGAACAACAACATGGTCAGA---AGACTCGAATCCGTCCATCTCAACAAGCAGCTGGTT 698221 Query 11622 GATCGTCTGTTCACGCTCATCGTTG----------GAGGGCATACCACCTGCCGAACGCT 11671 | || || ||||| ||||| ||| | | | ||||| |||| Sbjct 698222 AAGAGTAGCCTCTCGCTCGTCGTTACCGCCGCCTCGAGTGGA-ATCACCT------CGCT 698274 Query 11672 TCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCT 11731 |||| || | ||| ||||||||||| ||||| || ||| | || | ||| |||| Sbjct 698275 TCTTTCCAATAGCATCAATCTCATCAATGAAAACAATAGAGGGGGCCATCTGACGAGCCT 698334 Query 11732 GTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG 11791 | | ||| || || || || ||| |||||||| || || ||||| || | ||| | | Sbjct 698335 GCTTGAACAGGTCTCGAACTCGCGAAGCTCCAACTCCAACAAACATTTCCATGAACTCGG 698394 Query 11792 CGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGA 11850 ||||| || || | |||||| || || |||||| || |||| || | ||| Sbjct 698395 ATCCAGAA-ACAGACAGGAAGGGCACGCCAGCCTCACCGGCAGTGGCCTTGGCAACTAGA 698453 Query 11851 GTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC-ACT 11909 |||||||| |||||||| | |||| |||| || || |||||||||||||| || | | Sbjct 698454 GTCTTACCGGTACCAGGAGGTCCAGACAGAATAGCTCCTCGGGGGATCTTGGCTCCGAGT 698513 Query 11910 TCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 | | ||| || || | ||||||||||| |||| |||| || || ||||||| Sbjct 698514 TTC-TCGTACTTCTTGGGGTCCTTGAGGAAGTTGACAAACTCCATAATCTCGACCTTGGC 698572 Query 11970 GGAGTCGATACCCTCAACATC 11990 ||| || || | ||||| Sbjct 698573 CTCGTCCATTCCTGCGACATC 698593 >seq1 Length=4845111 Score = 113 bits (124), Expect = 5e-20 Identities = 261/387 (67%), Gaps = 15/387 (4%) Strand=Plus/Plus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGG- 11650 |||||||||||| || ||||||||||| | || || ||||||||||| Sbjct 4406417 GAAACCGTCCATCTCAACCAGAAGCTGGTTAAGAGTAGACTCTCGCTCATCGTTACCTCC 4406476 Query 11651 GCATACCACCTGCCGAA----CGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACG 11706 || | || ||||| | |||||||| || | || ||||||||||||| || | | Sbjct 4406477 GCCAA--ACTTGCCGGAGCCTCGCTTCTTTCCAATGGCATCAATCTCATCGACAAAAATG 4406534 Query 11707 ATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACA 11766 ||| || | || ||||| | || || || || || || ||||||||| Sbjct 4406535 ATAGCAGGAGCCATCTTTCGGGCCTGGGCAAACAGGTCTCGAACTCGAGAAGCTCCAACA 4406594 Query 11767 CCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTC 11825 || || ||||| ||||| || | | |||| ||| || | |||||| ||| | || Sbjct 4406595 CCAACAAACATTTCAACAAACTCGGATCCAGA-CACGGACAGGAAGGGCACACCGGCTTC 4406653 Query 11826 ACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGC 11885 |||||| |||| || | ||||||||||| |||||||| | |||| || | || Sbjct 4406654 ACCAGCAGTGGCCTTGGCAATCAGAGTCTTACCGGTACCAGGGGGTCCAGAAAGGATAGC 4406713 Query 11886 GCCACGGGGGATCTTGGCACC---ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTC 11942 || |||||||||||||| || || |||| | || || ||||||||||| Sbjct 4406714 TCCTCGGGGGATCTTGGCTCCAAGACGCTCAAACT---TCTGGGGGTTCTTGAGGAACCG 4406770 Query 11943 CACAATCTCCTCAAGTTCCTCCTTGGC 11969 ||||| |||| || ||||||||||| Sbjct 4406771 CACAAACTCCATAATCTCCTCCTTGGC 4406797 >seq5 Length=2743614 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 109713 GTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGG 109772 |||||| || | ||||||||| || | | ||||||||||||||| | ||||| || Sbjct 1440498 GTTGACGACTAGAAATTCACCTGCTTGGACTCTTCGGAGGTAGATGTTGGAGGTGTATGG 1440439 Query 109773 TTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCAT 109832 ||| |||||||| || | ||||| ||||| | |||||||||||| ||||| ||||| | Sbjct 1440438 TTCAAAACACTCGTTATGACCTAGAATTTGAGAAGTGGAAGCTGTAGGCATAGGAGCTAC 1440379 Query 109833 GAGAAGACTGTTTC 109846 || ||| ||||| Sbjct 1440378 TAGTAGAGAGTTTC 1440365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975860118200