Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 241 2e-58 seq6 165 1e-35 seq3 86.0 7e-12 >seq2 Length=4150472 Score = 241 bits (266), Expect = 2e-58 Identities = 1143/1787 (64%), Gaps = 57/1787 (3%) Strand=Plus/Minus Query 105558 TGAACTGAATTGGGCGCGCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTC 105617 ||||||| || ||| || ||| | | ||| || |||||||| ||||||||||| | Sbjct 326333 TGAACTGGATGGGGGCAGCGGCAGCCATGGTTCGCAGGTAGTACATACCGGTCTTGAGAC 326274 Query 105618 CTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGA 105677 | | ||||| |||| | ||||| |||| |||||| ||| || || | ||| Sbjct 326273 CCTTCTTCCAGCCGTAGAAGTGCATGGAAGTGAGCTTACCCATGGTGGGCTCCTTGATGT 326214 Query 105678 AAAGATTCAT--ACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCCATATCAAT 105735 || || | ||| |||| ||||||||||| || || | || ||||| || || Sbjct 326213 GAATGTTGAGGGACTGGGACT--GGTCAATGAAGGGAGATCGGTCGGCGGCCATCTCGAT 326156 Query 105736 GACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGGGAT 105795 || |||| || |||||||| || ||| || | |||||| || | ||||| Sbjct 326155 GATTCGCTTCTGGGAAATCTCCCACACGGTCTTGTACAGCTCCTTGATCTCCTGGGGGAT 326096 Query 105796 ATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACCATGAGATCCTTCATATCCTTGGA 105855 | | ||| || || | || || | ||| || | | ||||||| || | Sbjct 326095 GTTGGGGATGTTCTGCACGGATCCGTTGTCGGCGACAATTCGGTTCTTCATAGTCTCGTT 326036 Query 105856 CCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGACAATCACAAACTCTCC 105915 ||| ||||| | || || || |||| || |||||||||| ||||| || Sbjct 326035 CCAGAGACCGACCTCAACAAGGTCCTTGAGAAGCCAGGGGTTGACAATCTGGAACTCACC 325976 Query 105916 CGCGAGGGTTCTTCTCAGA-TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTAC 105974 || || || || ||| || ||||| | ||||| || || ||||| || || | Sbjct 325975 GGCAAGAACTCGTCG-AGAGTAAATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGAAGC 325917 Query 105975 CCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGAC 106034 | | || || | ||| || || || ||||| || || | || ||| ||| || |||| Sbjct 325916 CGAGAATCTGAGAGGTAGAAGCAGTGGGCATAGGAGCGACCAGCAGAGAGTTTCGCAGAC 325857 Query 106035 CCTTTTCCTTGATG-CGTTC--CTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTC-- 106089 | | ||||| | || |||||| | ||||| || || |||| ||| Sbjct 325856 CGTG---CTTGACAACCTTGGACTTGAGGTCGTCCCACTCCCAG---AGCTCGGTGGGGG 325803 Query 106090 -ACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCT 106148 | | | |||||| || || || || | || | ||| | ||||| |||| || |||| Sbjct 325802 AAACGTTCCACATGTCGAACTGCAGGTCTCCCTTGGAGGCAGGAGAGCCCTGGAAGGTCT 325743 Query 106149 CATAGGAACCTTGGGCTTCA---GCCAATTC-ACAGCTCGCCTCCAGGGATGCGTGATAC 106204 | |||| ||| | | ||| |||| || | || ||||| | || | |||| || Sbjct 325742 CGTAGGCACCCT---CCTCAATGGCCATCTCCATAGAG-GCCTCGACGGCTCCGTGGTAG 325687 Query 106205 ATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGG 106264 ||||| || ||||| | || | || |||||| || || || ||||| | | || | Sbjct 325686 ATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCGTCGGACTCAAAGGGG-AGACG 325628 Query 106265 CACAAA-ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCAT 106323 || | || || ||| || ||||| || ||||||| | | || |||| ||||||||| Sbjct 325627 CAGAGCCATGAAGGTATCAGCCAGACCCTGGACACCCAGAGCGATGGGTCGGTGTCGCAT 325568 Query 106324 ATTAGACTTTCGCGCAGTCTC---AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAG 106380 || ||||| || ||| |||||| || | |||| ||| |||| ||| || Sbjct 325567 GTTGGACTTCTTGGC---CTCGGGAACGGGGTAGTAGTTTCGGTCGATGATGGCGTTGAG 325511 Query 106381 ATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCA---AAAGTGCGAGT 106437 ||| || | ||| | || ||||| || || | | || || | | || Sbjct 325510 GTTTCGCACAATGACCTTGGCAATATCATGCAGCTTCTTGAAGTCGTAGAACGAGTTGGT 325451 Query 106438 CTCTTC---ATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTC 106494 ||| || | | || | | || || || || || |||| ||||| || || ||| Sbjct 325450 CTCGTCTCGAGTCACGAAAGTGGGCAGAGCAATGGAGGCCAGGTTGCAGACGGCAACCTC 325391 Query 106495 ATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAA 106554 ||| | | |||||| | ||| || ||||| ||||||| ||| || || |||| Sbjct 325390 ATCGGGAGAAGAGTACTCGACAATCTCGCAACACAGGTTGGAAGACTTGATGGTTCCCAG 325331 Query 106555 ATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGT 106614 ||||| ||||| |||| |||||| | ||||||||||||||| |||| | || | Sbjct 325330 GTTCTTCTGGTTGGACTTTCGGTTGCAGGAGTCCTTGTAGAGCATGAAGGGGTTTCCGGA 325271 Query 106615 CTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGG--CGTT 106671 ||| ||||| | | |||||| | ||||| | || | ||| || |||| ||| Sbjct 325270 CTCGGTCTGGCAGTCGAGAATGTGGTACCACAGCTTCTG-GGCGGG---GATGGTTCGTC 325215 Query 106672 GGCC-CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTC--AAACTCCTCACCCACCGC 106728 |||| |||||||| |||||||| ||| | ||||| ||||| ||||| | Sbjct 325214 GGCCTCGTCCCTCTCGCTCGTACTGCTCGTACA--GCTTCTTGAACTCGTCACCGTAGAC 325157 Query 106729 GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAAC 106788 |||| ||||| || || || || || | || | ||| | || || ||| || Sbjct 325156 GTCGTCAAGACCGGGGCACTCGTTGGGGCACATGAGGGTCCACTCGCCGTTCTGCTCGAC 325097 Query 106789 CCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTC 106848 |||| |||||| ||||| ||||||||||||| || || |||| || ||| Sbjct 325096 TCGCTCCATGAACAGGTCGGGAATCCACAGGGCCAGGAACAGGTCTCGGGCTCGGATCTC 325037 Query 106849 TTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTC 106908 || | || ||||| ||| | ||| |||||| | ||| || ||||||| ||||| Sbjct 325036 CTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGATGTCGTCGTGCCAAGGCTC 324977 Query 106909 AAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGT 106965 ||| || | || | | ||| ||| ||| | || | || || || || || Sbjct 324976 AAGGTACATGGCAAAGGCTCCGGGTCGCTTGTTACCACCCTGGTCAACGTATCGGGCAGT 324917 Query 106966 GGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT 107025 | ||| | || || ||||| || | ||||| | || ||| || || || ||| Sbjct 324916 GTTGTTGTAGACTCGGAGCATGGGCACGATACCGTTGGAGGTACCGTTGGTGCCGGCAAT 324857 Query 107026 ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGA 107085 || |||||| | | |||||| | || ||||| || || |||| || Sbjct 324856 GTAGGAGCCGGTGGCTCGAATGTTGTGGATGGAGAGACCGATACCTCCGGCAGACTTGGA 324797 Query 107086 GATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGC 107145 ||| | ||||| | | || || | ||||| |||| ||| ||||| ||||| || Sbjct 324796 GATGAGAGCACAGGTCTTGAGGGTATCGTAGATGCCGTCGATGGAGTCGTCCTTCATGTT 324737 Query 107146 GATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGT 107205 || ||||| || |||||||| || || || ||||| ||| |||| || || | Sbjct 324736 GACGAGGAAACACGAAGACATCTGGGGCTGGGGGGTTCCAGCGTTGTAGAGAGTGGGGGA 324677 Query 107206 TGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGT 107264 ||||| |||| ||| | |||||||| | || ||| ||||| | | | |||||| Sbjct 324676 AGCGTGGGTGAA-GTACTTCTGGGACATGTAGTTGTAGGTCTCAATGGCCCGGGCAATGT 324618 Query 107265 CTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGT 107311 || |||||||| |||| | || ||||| | ||| | |||||| Sbjct 324617 TGTCACCGTGGATACCGACAGAGACTCGCATGATCATCTGCTGGGGT 324571 >seq6 Length=2655350 Score = 165 bits (182), Expect = 1e-35 Identities = 302/440 (69%), Gaps = 2/440 (0%) Strand=Plus/Minus Query 116995 ACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAAT 117054 ||||||||||| |||||||||||||| ||| | || |||||| ||||| |||||||| Sbjct 575185 ACTCGCTTCTCGAAGAAGTTGGTCTTTCCAGCCAGAGAAATGTTCTCCATGAAGTCAAAG 575126 Query 117055 GGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGATCCGACACA 117114 || || | | ||| | | || |||| || ||||| || | |||| Sbjct 575125 GGGTTGGTGGAGTTGTAGACCTTGGGGTTTCCAAGAGCAACAAGCAGACGGTCGGCCACA 575066 Query 117115 TACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACATGGGAGTGCG 117174 |||||||||||| ||| || | ||||||||||| ||| ||| ||||| || Sbjct 575065 AACTCAATGTACTGTCGCATGAGCTTGGCGTTCATACCGAGCAGACCACAAGGGAGAGCA 575006 Query 117175 TCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTTTCG 117234 || | |||| | | |||||| |||| ||||| | || | | | || | | | Sbjct 575005 TCAGTAAGGAACTCCTGCTCAATGCCAACAGCCTCGACAATGACGTCCTCGACAATCTTC 574946 Query 117235 GTAGTGGGTCTATTACGCAAAGTCTT-GAAGAGCTCCACGGCAAACTCCTGGTGGAGACC 117293 | | ||||| || | | | || ||||||| |||||| || ||| ||||| Sbjct 574945 TTGGAGGGTCGGTT-CTCGAGGTGAGAGAAGAGCAGACAGGCAAAGTCGGTGTGCAGACC 574887 Query 117294 CTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCTT 117353 ||||||||| ||||| || || || |||||| ||||| ||||||||||| |||||||| Sbjct 574886 CTCATCTCGAGAAATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGACCTCGCTTCTT 574827 Query 117354 CAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGC 117413 | ||| |||| | | || || ||||||||||| |||||||| || ||||| || Sbjct 574826 GAGCCAGAAAATGGAGGCAAAAGATCCGGAGAAGAAAATACCCTCAACGGCAGCAAAGGC 574767 Query 117414 AAAAAGGCGCTCGGCGAAGG 117433 | ||| |||||| | |||| Sbjct 574766 GATAAGTCGCTCGCCAAAGG 574747 >seq3 Length=2956712 Score = 86.0 bits (94), Expect = 7e-12 Identities = 200/297 (67%), Gaps = 16/297 (5%) Strand=Plus/Plus Query 169179 ATGAGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCA 169238 || ||||||||||| ||||||||||| | ||| ||| ||||| ||||| ||| | || Sbjct 2329098 ATCAGACCCTTGATATGAGAACCATCGTGATCCTGATCGGTCATGATCATCAGATGTCCG 2329157 Query 169239 TAGCG-AAGTTCAGAAACATCTTGGTAGTCTTTTCCTTGT--TGAAGACCCAAGATCTTC 169295 || || |||| | | | | | ||||| || ||||| || ||||| | |||| | Sbjct 2329158 TACCGCAAGTCCTTACAAGTAGT-GTAGTGCTT--CTTGTGCTGCAGACCGATAATCTCC 2329214 Query 169296 TTGAGATCGTTGAACTCTTGGTT-----TGATGTGAGCTGTGCCACTGAAGCGTCGCGGA 169350 |||| | | || ||| ||| |||| ||| | ||| || || || |||| Sbjct 2329215 TTGATGGCCTGGATCTCGGCGTTCTTCATGATCTGATCGGTG-----GACGCTTCTCGGA 2329269 Query 169351 CATTCTTACACTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGA 169410 | || ||| ||||| ||||||||| | ||||| | || ||||||| || | | Sbjct 2329270 CGTTGAGCATCTTACCACGCAGAGGAAAGGCTCCATACCGCTCTCGTCCAATCACAGCAA 2329329 Query 169411 GACCCGCGACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACT 169467 |||| || || | ||| | ||||| || ||||| || | ||| || ||||||| Sbjct 2329330 GACCAGCATTGGCCATGGTCATGGCTGAGTCTCCCTCGGTCAGAATCAGCGTACACT 2329386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980659879560