Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq6 237 1e-56 seq3 136 3e-26 seq1 100 2e-15 >seq6 Length=2655350 Score = 237 bits (262), Expect = 1e-56 Identities = 578/869 (67%), Gaps = 10/869 (1%) Strand=Plus/Minus Query 551727 GGAACTCATGACGTAACTCTTCTATCTCTCGAAGATGGTCTCTTTTCTGTATTAGCTACT 551786 |||||| ||||| ||||| | || | |||||||| | || || |||||| Sbjct 100282 GGAACTTTCGACGTGTCTCTTTTGTCGATTGAAGATGGAATTTTCGAAGTCAAGGCTACT 100223 Query 551787 AGTGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTG 551844 ||||||| |||||||||| || || || ||||| || | ||||| | || | || Sbjct 100222 GCTGGAGATACTCATCTTGGAGGAGAGGACTTTGACAACCGTCTGGTGAACCAC--TTTG 100165 Query 551845 TTGAAGATTTTAAACGAAAAAACAAAGTTGATCTATCTAC--ATCTGCCAAAGCTCTTCG 551902 || | || || || ||||| |||| || | || || ||| | | |||||| | Sbjct 100164 TTCAGGAATTCAAGCGAAAGCACAAGAAGGACATTTCGACGAATCAG--AGAGCTCTGAG 100107 Query 551903 TCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCAC 551962 ||||| ||||||||||| || |||| || ||| || | || || |||| || | Sbjct 100106 ACGTCTGAGAACTGCTTGTGAGCGAGCTAAGCGAACTTTGTCTTCGTCAGCTCAGACTTC 100047 Query 551963 TATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAA 552022 ||||||| | ||||| | | |||||| ||||||| | || | || | | || Sbjct 100046 TATTGAAATTGATTCTCTTTATGAGGGTATTGATTTCTACACTTCCATCACTCGAGCTCG 99987 Query 552023 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTT 552082 |||||| || ||||| ||| | || ||| || ||||| || || || | ||| | Sbjct 99986 ATTTGAGGAACTTTGTCAGGATTTGTTCAGAGGCACTATTGATCCTGTGGAGAAGGTTCT 99927 Query 552083 AAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTAC 552142 |||| | ||||| |||||| | || | || ||||| || ||||| ||||| || Sbjct 99926 TCGAGACGCCAAGATGGATAAAGCTTCTGTCAACGAGATTGTTCTAGTTGGAGGATCCAC 99867 Query 552143 AAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGA 552202 ||||||| || | | || || | | || |||||| || || || | || Sbjct 99866 TCGAATTCCCAAGGTGCAGAAACTGGTTTCTGATTTTTTCAACGGCAAGGAACTCAACAG 99807 Query 552203 AAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTC 552262 | | || || ||||| |||||||||||||| || || |||| || |||||||| || Sbjct 99806 ATCCATCAACCCCGATGAAGCTGTTGCCTATGGAGCTGCTGTTCAGGCTGCTATTCTCTC 99747 Query 552263 TGGACAAACTGATGAAAA-ACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTC 552321 ||| | ||| | ||| || ||||| | ||| | || ||| ||||||| |||| Sbjct 99746 AGGAGACACTTCTTCTTCCACT-CAGGATATTCTGCTTCTTGACGTTGCTCCTCTGTCTC 99688 Query 552322 TTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTC 552381 |||| | || || | |||||| |||||||||| || || | |||| | ||||||| Sbjct 99687 TTGGAATTGAGACTGCTGGAGGAGTTATGACTAAACTGATTCCTCGAAACTCCACTATTC 99628 Query 552382 CTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTC 552441 | || || ||| ||| || || || | ||||| || ||| ||| |||| Sbjct 99627 CCACCAAGAAGTCTGAAACATTCTCCACCTACGCTGATAACCAGCCTGGAGTTCTGATTC 99568 Query 552442 AAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATT 552501 | |||| |||||||| ||| || || ||||| ||| || |||| || | Sbjct 99567 AGGTTTTCGAAGGAGAGAGAGCTCAAACCAAGGATAACAATATTCTCGGTAAATTCGAGC 99508 Query 552502 TAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCG 552561 | || || |||||||||||||| ||||| || || ||||| || ||||||||| | | Sbjct 99507 TCTCTGGAATCCCTCCTGCTCCTCGAGGAGTTCCTCAGATTGAGGTCACTTTCGATGTGG 99448 Query 552562 ATGCCAATGGAATTTTGAATGTGACTGCT 552590 | ||||| || ||| | || || ||||| Sbjct 99447 ACGCCAACGGTATTCTCAACGTCTCTGCT 99419 Score = 127 bits (140), Expect = 2e-23 Identities = 372/557 (67%), Gaps = 32/557 (6%) Strand=Plus/Minus Query 549996 TAGGTATAGATTTAGGAACCACATATAGTTGTGTTG-GTGTTTGGCAAAATGGTAAAGTT 550054 |||| || ||| | ||||||||||| ||||| | ||| || |||| | ||| Sbjct 100869 TAGGAATCGATCTGGGAACCACATACTCCTGTGTGGCCCATTTTGC-CAATGACAGAGTC 100811 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||| ||||| || || || || |||||||| || || || | ||| ||||||| || Sbjct 100810 GAAATCATTGCAAACGACCAGGGAAACAGAACCACCCCCTCGTTTGTCGCTTTCACCGAC 100751 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTACCAAT 550171 ||||||| | | || ||||| ||||| | || ||||| || || ||| |||| Sbjct 100750 ACTGAACGACTCATCGGAGATGCTGCAAAGAACCAGGCAGCCA-TG--AACCCTGCCAAC 100694 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || ||||||| || || || | |||||| ||| ||| |||| | ||||| Sbjct 100693 ACCGTTTTTGACGCCAAGCGACTCATTGGACGAAAGTTTGATGACGCTGAAGTTCAAAAC 100634 Query 550232 GATATGAAGCA-TTGGCCTTTCCAA--ATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288 || || || || ||||| | || | ||| | ||||||| || ||||||| Sbjct 100633 GACGCTAAACACTTTCCCTTTAAGATCATCGATAAGG---CTGGAAAGCCGAATATTGAG 100577 Query 550289 G-CTACTCATGAAGGATCTGTTAAACAA----TTTTCACCAGAACAAATTTCATCTATGG 550343 | | | | | |||| |||||| ||| | || || |||| || || ||| Sbjct 100576 GTCGAAT--TCAAGG---GCGAAAACAAGGTGTTTACTCCTGAGGAAATCTCGTCCATGA 100522 Query 550344 TTTTAATGAAAATGAAACAAACAGCC-AG---TGCTTTTGTTGGTCAAGAAGTTACGGAT 550399 || | | |||||||| | || ||| || | | || | || |||| || | ||| Sbjct 100521 TTCTCACTAAAATGAAGGAGACTGCCGAGGGATACCTTGGATG--CAAG--GTCAATGAT 100466 Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || |||||||| || || ||||| || || || || || ||||| || || ||| Sbjct 100465 GCTGTCATCACTGTACCTGCTTACTTTAACGATTCTCAGCGACAGGCTACAAAGGACGCT 100406 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || ||||| || || ||||| | | || || || ||||| || |||||||| || Sbjct 100405 GGTTTGATTGCCGGTCTGAATGTCCAGAGAATCATTAACGAACCCACAGCTGCTGCTATT 100346 Query 550520 GCATATGGACTTGATAA 550536 || ||||| |||||||| Sbjct 100345 GCTTATGGTCTTGATAA 100329 >seq3 Length=2956712 Score = 136 bits (150), Expect = 3e-26 Identities = 518/804 (64%), Gaps = 12/804 (1%) Strand=Plus/Plus Query 551781 GCTACTAGTGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCAT 551838 || ||| ||||||| ||||||| ||||| || ||||| ||||| |||| || | || Sbjct 1287348 GCCACTGCTGGAGATACTCATCTGGGTGGTGAGGATTTCGATAACCGACTTGTCAACCAC 1287407 Query 551839 GGTGTGTTGAAGATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGCCAA--AGC 551896 | ||| | || || || ||||| |||| || | || || | ||| ||| Sbjct 1287408 --TTTGTCCAGGAGTTCAAGCGAAAGCACAAGAAGGACATTTCCAC--CAACCAGCGAGC 1287463 Query 551897 TCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCA 551956 ||| || ||||| |||||||||| || ||||||| ||| |||| || ||| |||| Sbjct 1287464 TCTGCGACGTCTTCGAACTGCTTGTGAGCGAGCCAAGCGAACTCTGTCTTCTTCCGCTCA 1287523 Query 551957 AACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAG 552016 || | || || | || || | | ||||| ||||||| | || | || | | Sbjct 1287524 GACTTCCATCGAGATTGACTCTCTTTACGAGGGTATTGATTTCTACACCTCCATCACTCG 1287583 Query 552017 GGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACA 552076 ||| ||| || || | ||| ||||| || || || ||||| || || || | Sbjct 1287584 AGCCCGATTCGAGGAGCTCTGTCAGGATCTGTTCCGAGGCACCATTGAGCCCGTGGAGAA 1287643 Query 552077 AGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGG 552136 || | | || || ||||| || || || || | || |||||||| || || || Sbjct 1287644 GGTCCTCAAGGACTCCAAGATCGACAAGGCCTCTGTCAACGAGATTGTGCTGGTCGGAGG 1287703 Query 552137 ATCTACAAGAATTCCTAAAATTCGCGAAATG-TTAAGTTCTTATTTCAATGGTAAAAAAT 552195 || || | || || || | | | || || ||| || ||| ||||| | Sbjct 1287704 TTCCACCCGTATCCCCAAGGTGCAGAAGCTGGTTTCCGACTTCTT-CAACGGTAAGGAGC 1287762 Query 552196 TAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTA 552255 || | | || || ||||||||||||||||| || || || |||| || || | Sbjct 1287763 CCAACCGATCCATCAACCCCGATGAGGCTGTTGCCTACGGAGCTGCTGTTCAGGCTGCCA 1287822 Query 552256 TTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTC 552315 |||| ||||| | ||| | || || || | | || | |||||| |||||| Sbjct 1287823 TTCTGACTGGAGACACTTCTTCCAAGACCCAGGATCTGCTGCTGCTGGATGTTGCTCCTC 1287882 Query 552316 TATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTA 552375 | ||||| ||| | || || | ||||||| ||||||| || || || | |||| | | Sbjct 1287883 TGTCTCTCGGTATTGAGACTGCTGGAGGTGTTATGACCAAGCTCATTCCTCGAAACTCCA 1287942 Query 552376 CTATTCCTTGTAAAAAATCTCGTGTATTT-TCTACGTATTCAGATAATCAAACTGCTGTT 552434 | || || || || || || | ||| || || || | ||||| || | | ||| Sbjct 1287943 CCATCCCCACCAAGAAGTC-CGAGACTTTCTCCACCTACGCTGATAACCAGCCCGGTGTG 1288001 Query 552435 ACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACT 552494 ||||| | |||||||| || || || || ||||| || || |||| Sbjct 1288002 CTGATTCAGGTCTTTGAAGGTGAGCGAGCCCAGACCAAGGATAACAACATTCTCGGTAAG 1288061 Query 552495 TTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTC 552554 ||| | | || || |||||||||||||| ||||| || || ||||| || |||||| Sbjct 1288062 TTTGAGCTTTCTGGCATCCCTCCTGCTCCTCGAGGAGTTCCCCAGATTGAGGTCACTTTC 1288121 Query 552555 GATATCGATGCCAATGGAATTTTG 552578 ||| | || || || |||||| || Sbjct 1288122 GATCTTGACGCTAACGGAATTCTG 1288145 >seq1 Length=4845111 Score = 100 bits (110), Expect = 2e-15 Identities = 158/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 || ||||| || ||||||||||| ||| | ||| || |||||||||| ||||||| Sbjct 2006963 AGTCGGAGGACGAGATGAAGGGTGGACTCCTTCTGG--ATGTTGTAATCAGACAGAGTTC 2007020 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 | ||| ||||| || || ||||| || ||||||| ||||| || || |||||||| | Sbjct 2007021 GTCCATCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCT 2007080 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGA 563433 | || || ||||| || || || ||||| || |||| || | | ||||| Sbjct 2007081 CCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCAG-AAGACTCAACCTCGAGG 2007139 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | || || ||||| ||||| || || || || |||||| Sbjct 2007140 GTGATGGTCTTTCCAGTCAGAGTCTTGACAAAGATCTGCATA 2007181 Score = 87.8 bits (96), Expect = 1e-11 Identities = 156/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||| ||||| |||||||||||||| ||| | ||| || ||||| |||| |||||| Sbjct 2007418 GAGTCGGAGGACAAGATGAAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGACAGAGTT 2007475 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | | || ||||| || ||||| || ||||| |||| ||||| || || || ||||| Sbjct 2007476 CGTCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGGATTCCC 2007535 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432 || || || ||||| || || || ||||| || |||| || | | || || Sbjct 2007536 TCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCAG-AAGACTCGACCTCAAG 2007594 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | ||| || || || || || || ||||| || |||||| Sbjct 2007595 GGTGATAGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATA 2007637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029294995194310