Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq7 197 1e-45 seq5 87.8 1e-12 >seq7 Length=1104867 Score = 197 bits (218), Expect = 1e-45 Identities = 415/612 (68%), Gaps = 24/612 (4%) Strand=Plus/Minus Query 29800 TTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCT 29859 ||||| | |||||||||||| ||| ||||| |||||||||| ||||| | | |||| Sbjct 845654 TTCAGAGCATCCACGTGATCCTTGTACACGTGCGCGTCTCCCATAGTGTGAATGAGCTCT 845595 Query 29860 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 29919 || || || | || || || || ||||| ||||| | || ||| ||||| Sbjct 845594 CCACAGTCCAGATCCGTCACCTGGGCAATCATTCGTGTGAGCAAAGCGTACGACGCGATA 845535 Query 29920 TTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGA----- 29974 || ||||| || ||||| |||| ||| | |||| |||||| || || || || | Sbjct 845534 TTGAAGGGAACACCGAGTCCCAAGTCACATGACCGCTGGTACAGTTGGCATGACAACCGA 845475 Query 29975 ----GCTCTCCGTCGCT------CACGTAAAACTGACACATGGTGTGGCACGGAGGAAGA 30024 |||| ||| | |||||||||||| || | |||| || ||||| ||| Sbjct 845474 CCTCGCTCAGAGTCTTTGTACGACACGTAAAACTGGCAAAACATGTGACAAGGAGGCAGA 845415 Query 30025 GCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGG 30084 ||||||| || ||| |||||||||||| | | ||||| || ||||||| ||| Sbjct 845414 GCCATGATTTTCAGGTCAGCGGGGTTCCAGGCTGAAAGAATGATTCGTCTGTCTTGAGGG 845355 Query 30085 TTG--TTCCTGA-TGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAG 30141 || || | || || | ||| | |||| ||||||||||| ||| || | ||| Sbjct 845354 TTAGTTTTCAGAGTGTGAATCAC--CTGTTTG-AGCTGATCCACACCCTGACCGGTGTAA 845298 Query 30142 TCTGCCCTCATG-TCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGG 30200 |||| ||| ||| ||||||||||||| ||||| | ||| ||||| || || || || Sbjct 845297 TCTGTG-TCACAATCCTTGTACTCTGCTCCAAAATGACGCCATTGGAAGCCATAGACAGG 845239 Query 30201 TCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACC 30260 |||||| || || || | ||| | || || ||| |||| ||| || |||| || Sbjct 845238 TCCCAGATCACCTTCACGTCGGTGTCCCAATCCAGCCTTTTCCAGAAACTCCTTGGACCC 845179 Query 30261 GTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCT 30320 || |||||||||| | | || ||| || | ||| || |||| |||| Sbjct 845178 ATTTCCGTCCCAGATGTGGATATTTTTGTCGCTCAGTTTCTTGCCGTCTGTGCACCCAGA 845119 Query 30321 GACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG 30380 || ||||| ||||| ||||||| ||| | | ||||||| ||||| || ||||| || Sbjct 845118 CACAAACCAGAGCAGTTCCTCCAAAACGCCTCTGTAAAAGACTCTCTTAGTGGTGAGTAG 845059 Query 30381 -GGGAAACTGTC 30391 |||| | |||| Sbjct 845058 AGGGAGAATGTC 845047 >seq5 Length=2743614 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/186 (73%), Gaps = 10/186 (5%) Strand=Plus/Plus Query 52015 TCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT 52074 |||||||||| || || | ||| ||| | ||| |||| || ||||||||||| || Sbjct 360082 TCGTCAAGGTAAGAATGCGAACCACCAAGATCCCCCAGATTGGAGACAAGTTTGCATCTC 360141 Query 52075 -TCACGGCGCAAAAGGGGACGTGCGGAGC--CGTCCTGACCCAGGAGGACATGCC--CTT 52129 |||||| || ||||| || || | ||| ||| | ||||||||||| || Sbjct 360142 GTCACGGA-CAGAAGGGAACCATTGGTGTTACGTTTAGACAC--GAGGACATGCCGTTTT 360198 Query 52130 CGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCATCCAGGAT 52189 || | || || ||||||||||| |||||||||||||||||||| |||| || | || Sbjct 360199 CGGC--CGAGGGAGTGGTGCCCGATATCATCATCAACCCCCACGCCATTCCTTCGCGTAT 360256 Query 52190 GACCGT 52195 |||||| Sbjct 360257 GACCGT 360262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617505379487