Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2 338 1e-87 seq6 282 8e-71 >seq2 Length=4150472 Score = 338 bits (374), Expect = 1e-87 Identities = 953/1444 (66%), Gaps = 31/1444 (2%) Strand=Plus/Minus Query 221427 CGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAGG 221486 |||||||||||||||| |||||| ||||||| ||||||||||| || |||| Sbjct 325694 CGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCGTCGGACTCAAAGG 325635 Query 221487 GCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGT 221546 | | |||||| | ||| || ||||| ||||| || || | | ||||||| | || Sbjct 325634 GGAGACGCAGAGCCATGAAGGTATCAGCCAGACCCTGGACACCCAGAGCGATGGGTCGGT 325575 Query 221547 GTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGT 221606 ||| | ||||||| || || || ||||| || |||| |||||| | || Sbjct 325574 GTCGCATGTTGGACTTCTTGGCCTCGGGAACGGGGTAGTAGTTTCGGTCGATGATGGCGT 325515 Query 221607 TGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACT 221666 ||||||| | ||||| || | | || |||||||| | | | | | | | | Sbjct 325514 TGAGGTTTCGCACAATGACCTTGGCAATATCATGCAGCTTCTTGAAGTCGTAGAACGAGT 325455 Query 221667 CGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACA 221726 | |||| | ||| ||| |||| | || |||| | ||||||||| || | Sbjct 325454 TGGTCTCGTC-TCGAGT-----CACGAAAGTGGGCAGAGCAATGGAGGCCAGGTTGCAGA 325401 Query 221727 CGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGA 221786 |||| ||||| || | |||| | ||||| ||| |||||| |||||| Sbjct 325400 CGGCAACCTCATCGGGAGAAGAGTACTCGACAATCTCGCAACACAGGTTGGAAGACTTGA 325341 Query 221787 TGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGG 221846 |||| ||||||| || || || ||||| || ||| | ||||||||||||||| |||| Sbjct 325340 TGGTTCCCAGGTTCTTCTGGTTGGACTTTCGGTTGCAGGAGTCCTTGTAGAGCATGAAGG 325281 Query 221847 GACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG-CGCTCACC 221905 | || | ||| ||| | ||||| | || ||| || | ||||| || | Sbjct 325280 GGTTTCCGGACTCGGTCTGGCAGTCGAGAATGTGGTACCACAGCT-TCTGGGCGGGGATG 325222 Query 221906 GTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCA 221965 || | | || ||||| || | | | || || ||| | | |||| ||| Sbjct 325221 GTTCGTCGGCCTCGTCCCTCTCGCTCGTACTGCTCG---TACAGCTTCTTGAACTCGTCA 325165 Query 221966 CCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTG 222025 ||||| | ||||| || || || ||| | ||| ||||| || |||| | ||| Sbjct 325164 CCGTAGACGTCGTCAAGACCGGGGCACTCGTTGGGGCACATGAGGGTCCACTCGCCGTTC 325105 Query 222026 TCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTC 222085 | | ||| | || |||||| ||||| || |||||||| ||| | || || |||| || Sbjct 325104 TGCTCGACTCGCTCCATGAACAGGTCGGGAATCCACAGGGCCAGGAACAGGTCTCGGGCT 325045 Query 222086 CGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGC 222145 || ||||||| |||| ||| || | ||| || | ||||| || ||||| ||||| Sbjct 325044 CGGATCTCCTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGATGTCGTCGTGC 324985 Query 222146 CACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC-CAT 222204 || ||||| || || | ||| | || |||||||||||||| |||||||| || || || Sbjct 324984 CAAGGCTCAAGGTACATGGCAAAGGCTCCGGGTCGCTTGTTACCACCCTGGTCAACGTAT 324925 Query 222205 CCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGG 222263 | ||| | |||| ||| || || | || || | |||||||| |||||||| Sbjct 324924 C--GGGCAGTGTTGTTGTAGACTCGGAGCATGGGCACGATACCGTTGGAGGTACCGTTGG 324867 Query 222264 TGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATACCACCGG 222323 |||| |||||| | ||| ||| | | ||| | || | |||||||| |||| Sbjct 324866 TGCCGGCAATGTAGGAGCCGGTGGCTCGAATGTTGTGGATGGAGAGACCGATACCTCCGG 324807 Query 222324 CGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCT 222383 | || ||||| | || ||| ||||||| || || |||||| || || ||||| | Sbjct 324806 CAGACTTGGAGATGAGAGCACAGGTCTTGAGGGTATCGTAGATGCCGTCGATGGAGTCGT 324747 Query 222384 CCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACA 222443 |||| | ||| | || ||||| || |||||||| | | || || | ||||| | | Sbjct 324746 CCTTCATGTTGACGAGGAAACACGAAGACATCTGGGGCTGGGGGGTTCCAGCGTTGTAGA 324687 Query 222444 GCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTC 222503 | ||||| ||||| || ||||| | ||||| | ||| ||||| | | | | Sbjct 324686 GAGTGGGGGAAGCGTGGGTGAAGTACTTCTGGGACATGTAGTTGTAGGTCTCAATGGCCC 324627 Query 222504 TGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCT 222563 ||| |||||||| ||||| || | | | || |||| ||| | |||||| | || Sbjct 324626 GGGCAATGTTGTCACCGTGGATACCGACAGAGACTCGCATGATCATCTGCTGGGGTCGCT 324567 Query 222564 ---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAA 222620 | |||| || ||| || || |||||||| | | ||||| |||||||| |||| Sbjct 324566 CGGCAACAGCTCCGTTG--ACTCGA-AGCAGGTATGCTCGCTCCAGGGTCTTGAAGCCAA 324510 Query 222621 AGTAGTTG-AGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGCTC--CGAC-TTG 222676 |||||||| |||| ||||||| | ||| | ||||| ||| ||||| || | ||| Sbjct 324509 AGTAGTTGTAGGT-GAAGTCTCGGTCGTAGAGAACGGCACCGTTGAGCTCGTCGGCGTTG 324451 Query 222677 TGCTTTACGCTCAACTCGAAAAAGCGCTCAGACACGAGGGGAGCGTTCTCTTTGGTGTCG 222736 || ||| | ||| | | | || ||||| | ||| | || || ||| | | Sbjct 324450 GCCTGGACGGT---GTCGTAGAGGTCCTTGGACACCATGGGGGAGTGCTTCTTGTTTCGG 324394 Query 222737 GGGTTAACGTTGTGGTACAGCTGCCACATGGCATCAGAGAAC-GTGTCGGGAGTCTGCTT 222795 ||||| |||| ||||||||| | | | | | |||||| | || | |||||||| Sbjct 324393 GGGTTGACGTAGTGGTACAGGTCGTAGACAACCTGGGAGAACTGCTTCTTG-GTCTGCTT 324335 Query 222796 GTGCAGATTCGACACGGCGATCCGAGACGCCAAGATACCATAGTCAGGGTGCACGGTGGT 222855 |||||| || || || ||||| |||| |||| || | ||||| || |||| ||||| Sbjct 324334 GTGCAGGTTGGAAACAGCGATTCGAGCAGCCAGAATGGCGTAGTCGGGATGCAGAGTGGT 324275 Query 222856 CATG 222859 |||| Sbjct 324274 CATG 324271 >seq6 Length=2655350 Score = 282 bits (312), Expect = 8e-71 Identities = 571/843 (68%), Gaps = 24/843 (3%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || ||| |||||||||||||||| | || |||||||||||| ||||||||| Sbjct 574350 GAGATTTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAGATTGAT 574409 Query 25534 CTGGCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTC 25588 || | |||||| |||| || |||| | |||| | || |||||| || ||| Sbjct 574410 CTCGGCAAGGATATGGGCGACTGGGAGAACCGGCTCAA--CAGCGACGAGAAGTTTTTCA 574467 Query 25589 TCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCG 25648 | | ||||| |||| |||||||| |||||||| ||||| || |||||||| ||| | Sbjct 574468 TTTCGCACGTGCTGGCTTTCTTTGCTGCCTCTGACGGTATTGTCAACGAGAACCTGGTTG 574527 Query 25649 AGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGG 25708 || | ||| | | || || ||| ||||||||||| |||||||| |||||||| Sbjct 574528 AGCGGTTCTCTGGAGAGGTTCAGGCTCCTGAGGCCAAGTGCTTCTACGGATTCCAGATCA 574587 Query 25709 CCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGAC 25767 || || || | || || ||| || | ||| | ||| || ||||| | ||| Sbjct 574588 TGATGGAGAACATCCATTCCGAGACCTACTCTCTGCTCATTGAT-ACTTACATCAAGGAC 574646 Query 25768 GTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAG 25827 | ||| || | ||||| ||||| ||| ||| ||| ||||||||| |||| Sbjct 574647 CCCAAGGAGCGAACTTACCTGTTCAACGCCATTGAGACCATTCCCTGCATCAAGAAGAAG 574706 Query 25828 GCGCGGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGT 25886 || ||||| | ||||||||| | | | ||| |||| ||||||||||| || | Sbjct 574707 GCCGACTGGGCTCTCAAGTGGATCTCCGACGACGAGT-CTACCTTTGGCGAGCGACTTAT 574765 Query 25887 AGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT 25946 ||||||||||| || ||||| || || ||| ||| || ||||| |||| |||||||| Sbjct 574766 CGCCTTTGCTGCCGTTGAGGGTATTTTCTTCTCCGGATCTTTTGCCTCCATTTTCTGGCT 574825 Query 25947 CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 |||| || || |||||| || ||| ||| |||||||||||||| | || || Sbjct 574826 CAAGAAGCGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATTTCTCGAGATGA 574885 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAA---ACC 26063 |||||| |||| || |||||||| ||||||| | | ||| ||| | || ||| Sbjct 574886 GGGTCTGCACACCGACTTTGCCTGTCTGCTCTTCTC---TCAC---CTCGAGAACCGACC 574939 Query 26064 TTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTC 26122 || |||| ||| ||| | |||| |||||||| | || ||| ||||||| | Sbjct 574940 CTC-CAAGAAGATTGTCGAGGACGTCATTGTCGAGGCTGTTGGCATTGAGCAGGAGTTCC 574998 Query 26123 NNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACA 26182 | || |||||| || |||||| | || |||| Sbjct 574999 TTACTGATGCTCTCCCTTGTGGTCTGCTCGGTATGAACGCCAAGCTCATGCGACAGTACA 575058 Query 26183 TTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTCTACAGTACG 26241 |||||| ||||||||||| ||||| ||| | || ||| | ||| |||||| | Sbjct 575059 TTGAGTTTGTGGCCGACCGTCTGCTTGTTGC-TCTTGGAAACCCCAAGGTCTACAACTCC 575117 Query 26242 CCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAA 26301 | ||||| || ||||| ||||| ||||| || ||| || |||||||||||||| || Sbjct 575118 ACCAACCCCTTTGACTTCATGGAGAACATTTCTCTGGCTGGAAAGACCAACTTCTTCGAG 575177 Query 26302 AAG 26304 ||| Sbjct 575178 AAG 575180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844579399360