Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6 165 1e-35 seq5 89.7 6e-13 >seq6 Length=2655350 Score = 165 bits (182), Expect = 1e-35 Identities = 302/440 (69%), Gaps = 2/440 (0%) Strand=Plus/Plus Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 |||| | |||||| ||| | || ||||| || |||||||| ||||||||||| || | Sbjct 574747 CCTTTGGCGAGCGACTTATCGCCTTTGCTGCCGTTGAGGGTATTTTCTTCTCCGGATCTT 574806 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 | | | |||| ||| | |||||||| ||||||||||| ||||| |||||| || | Sbjct 574807 TTGCCTCCATTTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGCCTGACCTTCTCCAACG 574866 Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTC-AAGACT 65247 | || ||||| |||||||||||||| ||| || |||||| ||||||| || Sbjct 574867 AGCTCATTTCTCGAGATGAGGGTCTGCACACCGACTTTGCCTGTCTGCTCTTCTCTCACC 574926 Query 65248 TTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATT 65307 | | | || ||||| | | | | | || | | | || | ||||| |||| ||| Sbjct 574927 TCGAG-AACCGACCCTCCAAGAAGATTGTCGAGGACGTCATTGTCGAGGCTGTTGGCATT 574985 Query 65308 GAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAG 65367 ||| | | |||| | || || ||||| ||| ||| ||||||||||| | || Sbjct 574986 GAGCAGGAGTTCCTTACTGATGCTCTCCCTTGTGGTCTGCTCGGTATGAACGCCAAGCTC 575045 Query 65368 ATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCC 65427 ||| |||||||||||| |||| | || ||||| || |||| || Sbjct 575046 ATGCGACAGTACATTGAGTTTGTGGCCGACCGTCTGCTTGTTGCTCTTGGAAACCCCAAG 575105 Query 65428 ATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACC 65487 | | ||| | | || || |||||||| ||||| |||||| || | ||| |||||| Sbjct 575106 GTCTACAACTCCACCAACCCCTTTGACTTCATGGAGAACATTTCTCTGGCTGGAAAGACC 575165 Query 65488 AACTTCTTTGAGAAGCGAGT 65507 |||||||| ||||||||||| Sbjct 575166 AACTTCTTCGAGAAGCGAGT 575185 >seq5 Length=2743614 Score = 89.7 bits (98), Expect = 6e-13 Identities = 282/425 (66%), Gaps = 18/425 (4%) Strand=Plus/Plus Query 76511 GCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCA 76570 || || ||||| ||||| ||||| | ||||| | ||| |||| || || ||||||||| Sbjct 1440382 GCTCCTATGCCTACAGCTTCCACTTCTCAAATTCTAGGTCATAACGAGTGTTTTGAACCA 1440441 Query 76571 TACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAG 76630 ||||| | ||||||||||| ||||| || |||||||| ||| | | |||||| | Sbjct 1440442 TACACCTCCAACATCTACCTCCGAAGAGTCCAAGCAGGTGAATTTCTAGTCGTCAACCAA 1440501 Query 76631 CACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATC---TC 76687 ||| | || || |||| || | || | ||| | || ||||| | | || Sbjct 1440502 TGGCTCATGAAAGATCTCATCAAACTGGGCATGTGGAATGAAGAGATGAAAAACCGAATC 1440561 Query 76688 AT-GGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAA 76746 || || | ||| | | || || || ||||| |||||||| | ||| ||| Sbjct 1440562 ATCCACGATAACGGCTCTGTTCAGTC--GATTACTCAG--ATCCCAGAAAAGATC-AGAG 1440616 Query 76747 TC-TCTACCGCACAGTGTGGGAAATCAAGATGAAAGA-TGTCATTGACATGGCCGCAGAT 76804 | | ||||| |||| ||||| ||||| | | || | ||||||| ||||| |||| Sbjct 1440617 CCGTGTACCGAACAGCCTGGGAGATCAA-AGCCAGGAGTATCATTGATATGGCAGCAGCA 1440675 Query 76805 CGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCAT---GGAAAGTCCAACG 76861 || | || | |||||| ||| || || ||||| | ||||| ||||| | | Sbjct 1440676 CGAGCTCCGTACATTGACCAATCACAGAGCTTGAATATTTTCATGCCGGAAATT--ACTC 1440733 Query 76862 ATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATG 76921 ||| || || | | |||||| | ||| ||||| ||| |||||||| || ||| Sbjct 1440734 ATG-GAAAAATCACAGCCATGCATTTCCACGGCTGGAAGACGGGTCTCAAAACAGGCATG 1440792 Query 76922 TACTA 76926 || || Sbjct 1440793 TATTA 1440797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569458314720