Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5 131 5e-25 seq2 127 6e-24 seq6 116 1e-20 seq4 93.3 1e-13 >seq5 Length=2743614 Score = 131 bits (144), Expect = 5e-25 Identities = 376/570 (66%), Gaps = 14/570 (2%) Strand=Plus/Minus Query 251425 CACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGAT 251484 || ||||| | | | |||||||||| || || || || ||||| ||| || Sbjct 360682 CAAACATGAATTCGGAAAGCATCAGACGCCTCCATCAGACGCTCCTTGAGGAAAGCAGCG 360623 Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 ||||| || | |||||||||||||||||||||||| |||||||| |||||||| || | Sbjct 360622 GCACCATGGGCAATCATACAATCACGCTCCATTTCTCCGAAACGCAGACCACCTTCTCTC 360563 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAG--CGGCTAT 251602 | | ||| || ||||||| ||||||||| | || ||| || | ||| ||| | Sbjct 360562 GATCGACCTTCAACAGGCTGTCGAGTGAGAATCTGCACAGGTCC--TCGAGCTCGGGCGT 360505 Query 251603 GTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGC 251662 | ||| || | |||||||| | |||||||||||| | | ||||| | ||| | | Sbjct 360504 GGATCTTGTCGTCCACCATATGTCTCAGACGCTGGTAGTAAGTAGGACCCAGGAA-ACAC 360446 Query 251663 TCGAAGGC---ATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATT 251719 | | | | || | || |||||| || | | ||||| || || || ||| | Sbjct 360445 TGG--GCCATAATCTTCTTTCCAGTGTGACCATGGTACATGACCTCAAAGCCTCGAGACT 360388 Query 251720 CATAACCAAGTTTCTGTAGCTCTGAAGCAATATCACCAATCTTGAATTTGCTAAAACTGG 251779 || ||| | | | || | || ||| || ||| | | | | ||| | Sbjct 360387 GGTATCCATGAGACCGCAGGAGTTTAGAAATGGCATCAACAGTCACATCAGTGAAAGGCG 360328 Query 251780 TGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCTAAAAGTGTCTCTTTCAGTT 251839 || | ||||| | |||||| | | |||| ||| || || ||| ||| | Sbjct 360327 TGGCATCTCCCTCCAGACCCGACAAACACGACACCTTGGACAACAGACACTCAATCAAAT 360268 Query 251840 GGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTC 251899 |||| | |||||||| ||||| || ||||| ||||||||||| ||||| || || Sbjct 360267 GGGCAACGGTCATACGCGAAGGAATGGCGTGGGGGTTGATGATGATATCGGGCACCACTC 360208 Query 251900 CATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAATGT--TTCCAATAGTTCCCTTTTG 251957 | || || | || ||||| |||| | || | || || ||||| |||||||| || Sbjct 360207 CCTCGGCCGAAAACGGCATGTCCTCGT-GTCTA-AACGTAACACCAATGGTTCCCTTCTG 360150 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 |||||||||||| ||||| || ||||| Sbjct 360149 TCCGTGACGAGATGCAAACTTGTCTCCAAT 360120 >seq2 Length=4150472 Score = 127 bits (140), Expect = 6e-24 Identities = 559/876 (64%), Gaps = 9/876 (1%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || |||||||| || |||||||| ||| ||||||||| || | ||||||||||| Sbjct 325378 GTACTCGACAATCTCGCAACACAGGTTGGAAGACTTGATGGTTCCCAGGTTCTTCTGGTT 325319 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || || | ||| || | |||||||| || ||| | ||| |||| | ||| |||| Sbjct 325318 GGACTTTCGGTTGCAGGAGTCCTTGTAGAGCATGAAGGGGTTTCCGGACTCGGTCTGGCA 325259 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTA-TCTGCCTTCCG 155808 ||| ||||| | ||| || | |||| || | | || | || || || Sbjct 325258 GTCGAGAATGTGGTACCACAGCTTCTGGGCGGGGATG-GTTCGTCGGCCTCGTCCCTCTC 325200 Query 155809 ACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGC 155868 ||| || | | |||||| | | | || |||||||| || || || |||| Sbjct 325199 GCTCGTACTGCTCGTACAGCTTCTTGAACTCGTCACCGTAGACGTCGTCAAGACCGGGGC 325140 Query 155869 ACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT-ACACGCTCCATAAATACA 155927 ||| | |||||| | || | ||| || | | | || |||||||| || | Sbjct 325139 ACTCGTTGGGGCACATGAGGGTCCACTCGCCGTT-CTGCTCGACTCGCTCCATGAACAGG 325081 Query 155928 TCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGA-CTCCTCATCGCCGTGATT 155986 || ||| | || ||| ||||| | || | || |||||| | ||||| || Sbjct 325080 TCGGGAATCCACAGGGCCAGGAACAGGTCTCGGGC-TCGGATCTCCTCCTTTCCGTGGTT 325022 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 ||| || ||||| |||| || || || || ||||| || ||||| ||||| Sbjct 325021 CTTTCGCAGCTCGCAGAACTCGAAGATGTCGTCGTGCCAAGGCTCAAGGTACATGGCAAA 324962 Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 || | |||| |||||||| || || || || ||||| || ||| |||| | Sbjct 324961 GGCTCCGGGTCGCTTGTTACCACCCTGGTCAACGTATCGGGCAGTGTTGTTGTAGACTCG 324902 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163 ||||| || | ||||| ||||| || || ||||| ||| ||| | || || | | Sbjct 324901 GAGCATGGGCACGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAGGAGCCGGTGGC 324842 Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTC 156223 |||| || || || || || ||||| || | | || || || |||| || Sbjct 324841 TCGAATGTTGTGGATGGAGAGACCGATACCTCCGGCAGACTTGGAGATGAGAGCACAGGT 324782 Query 156224 CTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGA 156283 ||| | |||| | | || || || || || || || | ||| | || | ||||| Sbjct 324781 CTTGAGGGTATCGTAGATGCCGTCGATGGAGTCGTCCTTCATGTTGACGAGGAAACACGA 324722 Query 156284 ACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343 | | || || | || |||||||||||| | || || || | || || | || || Sbjct 324721 AGACATCTGGGGCTGGGGGGTTCCAGCGTTGTAGAGAGTGGGGGAAGCGTGGGTGAAGTA 324662 Query 156344 CTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACA 156403 ||| | ||||| || | ||| ||||| | | ||| || ||||| |||| Sbjct 324661 CTTCTGGGACATGTAGTTGTAGGTCTCAATGGCCCGGGCAATGTTGTCACCGTGGATACC 324602 Query 156404 GATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAG 156463 || |||||| | ||| ||| ||||| || ||||| ||| |||| | | ||| || Sbjct 324601 GACAGAGACTCGCATGATCATCTGCTGGGGTCGCTCGGCAACAGCTCCGTTGACTCGAAG 324542 Query 156464 AAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 |||||||| || ||||| || || || || || || Sbjct 324541 CAGGTATGCTCGCTCCAGGGTCTTGAAGCCAAAGTA 324506 >seq6 Length=2655350 Score = 116 bits (128), Expect = 1e-20 Identities = 410/628 (65%), Gaps = 18/628 (3%) Strand=Plus/Plus Query 133318 CTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAAT 133377 ||| || || | ||||| |||||| || |||||||| || || ||| || || Sbjct 574568 CTTCTACGGATTCCAGATCATGATGGAGAACATCCATTCCGAGACCTACTCTCTGCTCAT 574627 Query 133378 TGATACTTACATCAAAGATACCGTCCAGAAGC--AC-AAACTATTCAACGCCATTAGCGA 133434 ||||||||||||||| || | | || ||| || | || |||||||||||| | || Sbjct 574628 TGATACTTACATCAAGGA---CCCCAAGGAGCGAACTTACCTGTTCAACGCCATT-GAGA 574683 Query 133435 -ATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGAC-AAGCGT 133492 |||| || || || ||||| | ||||||||| | || |||||| ||| | | || Sbjct 574684 CCATTCCCTGCATCAAGAAGAAGGCCGACTGGGCTCTCAAGTGGATCTCCGACGACGAGT 574743 Query 133493 GCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGT 133552 | | |||| || || | || ||||||| || ||||| ||||| ||| || Sbjct 574744 -CTACCTTTGGCGAGCGACTTATCGCCTTTGCTGCCGTTGAGGGTATTTTCTTCTCCGGA 574802 Query 133553 GCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCT 133612 | || ||| ||||| ||||| || ||||| ||| | | ||||| ||| || || Sbjct 574803 TCTTTTGCCTCCATTTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGCCTGACCTTCTCC 574862 Query 133613 AACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCT 133672 ||||| || ||||| | || |||| || |||||||| |||||| | | || |||| Sbjct 574863 AACGAGCTCATTTCTCGAGATGAGGGTCTGCACACCGACTTTGCCTGTCTGCTCTTCTCT 574922 Query 133673 AAATTAGAG---CGACCACTCAAAAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTT 133729 | | ||| ||||| ||| ||||| | | || || | ||| || || ||| Sbjct 574923 CACCTCGAGAACCGACC-CTC--CAAGAAGATTGTCGAGGACGTCATTGTCGAGGCTGTT 574979 Query 133730 GAAATTGAGGTTGAATTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGAT 133789 | |||||| || || | | | |||||| || || || | | |||||||| | Sbjct 574980 GGCATTGAGCAGGAGTTCCTTACTGATGCTCTCCCTTGTGGTCTGCTCGGTATGAACGCC 575039 Query 133790 GTGCTGATGCAGCGTTATATTGAATTTGTAGCTGACAGATTGGCCGTTCAGTTAGGTGGG 133849 ||| |||| | || ||||| ||||| || ||| | || ||| | || Sbjct 575040 AAGCTCATGCGACAGTACATTGAGTTTGTGGCCGACCGTCTGCTTGTTGCTCTTGGAAAC 575099 Query 133850 GATAAGATTTACGGTTCCGCCAATCCATTCGACTGGATGGAGAGCATTAGCATTGAATCA 133909 ||| | ||| ||| |||| || || |||| ||||||| |||| | | | Sbjct 575100 CCCAAGGTCTACAACTCCACCAACCCCTTTGACTTCATGGAGAACATTTCTCTGGCTGGA 575159 Query 133910 AAGACTAATTTCTTCGAG--GCGAGGGT 133935 ||||| || ||||||||| ||||| || Sbjct 575160 AAGACCAACTTCTTCGAGAAGCGAGTGT 575187 Score = 93.3 bits (102), Expect = 1e-13 Identities = 91/117 (78%), Gaps = 3/117 (3%) Strand=Plus/Minus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAA 301874 |||||| | |||||||| |||||| |||| ||||| | |||| |||||||| || || Sbjct 1861238 AATTTCCTTGATACGGGGTACACCAAGGGTAACGTT---CATGGAAGCAACACCGGCGAA 1861182 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931 |||||||| ||||| || | |||||| |||||||||||||| || || |||| Sbjct 1861181 ATGGAAAGTCTTCAGGGTCATCTGAGTACCGGGCTCACCAATACTCTGGGCACCAAT 1861125 >seq4 Length=2864709 Score = 93.3 bits (102), Expect = 1e-13 Identities = 129/179 (72%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 || |||| | ||| | |||||| ||||||||||| |||| ||| ||||||||||| ||| Sbjct 1112941 GCTCCGTAAGCAATAACACAATCTCGCTCCATTTCTCCGAGACGCAGACCACCATCTCGA 1112882 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAG--CGGCTAT 251602 | | |||||||| |||||| ||||||||| | |||||| | ||| || || Sbjct 1112881 GATCGACCCTCGGTAGGCTGTCGAGTGAGAACTGCTCGAGGACC--TCGAGGTCGAGCAT 1112824 Query 251603 GTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATG 251661 | ||| || | ||||||||||| || ||||||| | ||| || | ||| ||| Sbjct 1112823 GCATCTTGTCCATGACCATATGCTTCAGCTTCTGGTAGTAGATGGGGCCAAAGAAAATG 1112765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817241704403