Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2 203 4e-46 seq3 136 5e-26 seq6 134 2e-25 seq1 118 1e-20 >seq2 Length=4150472 Score = 203 bits (224), Expect = 4e-46 Identities = 225/300 (75%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| ||||| || || |||| ||| |||| |||||||||||||||| |||||||| Sbjct 324937 CTGGTCAACGTATCGGGCAGTGTTGTTGTAGACTCGGAGCATGGGCACGATACCGTTGGA 324878 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||||||||| || | ||||| ||||| ||| || | ||||| || | || Sbjct 324877 GGTACCGTTGGTGCCGGCAATGTAGGAGCCGGTGGCTCGAATGTTGTGGATGGAGAGACC 324818 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || ||||| |||||||||||||| || || ||||| || ||||||||||| || Sbjct 324817 GATACCTCCGGCAGACTTGGAGATGAGAGCACAGGTCTTGAGGGTATCGTAGATGCCGTC 324758 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| |||||| ||||||||| ||||| || ||||| || | || || || | || || Sbjct 324757 GATGGAGTCGTCCTTCATGTTGACGAGGAAACACGAAGACATCTGGGGCTGGGGGGTTCC 324698 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||| |||| ||||| | || |||||| ||| | | |||||| || |||||| Sbjct 324697 AGCGTTGTAGAGAGTGGGGGAAGCGTGGGTGAAGTACTTCTGGGACATGTAGTTGTAGGT 324638 >seq3 Length=2956712 Score = 136 bits (150), Expect = 5e-26 Identities = 284/423 (67%), Gaps = 0/423 (0%) Strand=Plus/Minus Query 18060 CATGAGCACATTCGGCAAGGTATTTAGGGTCACCACCTTTGGCGAGTCGCACGGGGCGGG 18119 ||||||||| ||||||| | || | |||||||||| ||||| |||||| | | Sbjct 1415225 CATGAGCACTTTCGGCACTCTCTTCAAAGTCACCACCTACGGCGAATCGCACTGCAAGTC 1415166 Query 18120 CGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCCA 18179 ||| || ||||| |||||||||| || || | ||| || | |||| | || || || Sbjct 1415165 CGTGGGATGCATTGTCGACGGCGTTCCTCCCGGTATGGAGCTTGACGAGTCTGATATTCA 1415106 Query 18180 GCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGCC 18239 |||||| || ||| || |||| || || || ||| |||| || || ||||||| Sbjct 1415105 GCCTCAACTGACTCGACGAAGACCCGGTCAATCTGCTCTTACCACTCCTCGAAACGAGCG 1415046 Query 18240 CGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGG 18299 ||| ||| || ||||| || ||| | ||| || || ||| | ||| | | Sbjct 1415045 AGATGCCGTTGCTATTCAGTCTGGATGTGAGTATGGCAAGACTCTGGGCACTCCCATTGC 1414986 Query 18300 CCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGCC 18359 | | | ||| ||| |||||||| || || || || || ||| | | || Sbjct 1414985 CATGCTGGTGCAAAACAAGGACCAGCGACCTCATGATTACTCTGAGATGGACGATTACCC 1414926 Query 18360 GCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGG 18419 || || || || ||||||||||| ||| || |||||||| |||||||| || || || Sbjct 1414925 TCGACCTTCCCATGCCGACTACACTTACCAGGAAAAGTACGGAATCAAGGCTTCTTCTGG 1414866 Query 18420 CGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGA 18479 ||||| || || || || || ||||| || || || || ||||| || | ||||| Sbjct 1414865 AGGAGGACGATCTTCAGCTCGAGAGACTATCGGACGAGTGGCTGCCGGAGCTATTGCCGA 1414806 Query 18480 GAA 18482 || Sbjct 1414805 CAA 1414803 >seq6 Length=2655350 Score = 134 bits (148), Expect = 2e-25 Identities = 207/291 (71%), Gaps = 11/291 (4%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || ||||||||||| || ||||||||| ||||| ||| | | |||| | | || Sbjct 574606 GAATGGATGTTCTCCATCATGATCTGGAATCCGTAGAAGCACTTGGCCTCAGGAGCCTGA 574547 Query 869693 ACCTCCTTCAT-GAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAA 869751 ||||| | || |||||| | ||||||||||| || || ||||| ||| || || Sbjct 574546 ACCTC-TCCAGAGAACCGCTCAACCAGGTTCTCGTTGACAATACCGTCAGAGGCAGCAAA 574488 Query 869752 AAAAGCCAGGACGTGCT---TGATAAAGTGGCGCTCGTCGTCGCTGAGCGA---CACCCA 869805 |||||||| |||||| ||| ||| | ||||||| | ||||| | |||| Sbjct 574487 GAAAGCCAGCACGTGCGAAATGAAAAACTT---CTCGTCGCTGTTGAGCCGGTTCTCCCA 574431 Query 869806 GTGGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTT 869865 || | | | || || ||| || | ||||||||||||||||| || ||||||||||| Sbjct 574430 GTCGCCCATATCCTTGCCGAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGGCCTT 574371 Query 869866 TTTGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCG 869916 |||||||||| ||| | | ||||| | ||||||||||| ||||| || Sbjct 574370 CTTGTACATCTGCCAAATCTCATGGTACTGAATAGGGAAGAGCACAAACCG 574320 Score = 127 bits (140), Expect = 2e-23 Identities = 191/267 (72%), Gaps = 11/267 (4%) Strand=Plus/Minus Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260 |||||| |||| ||||| |||||||| || |||||||||||||| || |||| | Sbjct 574867 TCGTTGGAGAAGGTCAGGCCAGGCATGAGACCTCGCTTCTTGAGCCAGAAAATGGAGGCA 574808 Query 869261 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAG 869320 ||| || ||||| || || ||||| ||||| |||||| |||| || |||||| ||||| Sbjct 574807 AAAGATCCGGAGAAGAAAATACCCTCAACGGCAGCAAAGGCGATAAGTCGCTCGCCAAAG 574748 Query 869321 GTGTCGAGGC-CCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGA 869379 || || | | || | | ||||||||| | |||||||||||||| ||| | | | Sbjct 574747 GT----AGACTCGTCGTCGGAGATCCACTTGAGAGCCCAGTCGGCCTTCTTCTTGATGCA 574692 Query 869380 CGGCACCGTGTCGATGGCGCGAAAGAGGT--GGTC-CTTTTCGGCCGGGTCCTTGACATA 869436 || | || || |||||| || |||| | || || | | |||||||||| || Sbjct 574691 GGGAATGGTCTCAATGGCGTTGAACAGGTAAGTTCGCTCCTTG---GGGTCCTTGATGTA 574635 Query 869437 GGTGTCGATCAGGAGCGAATAGGTCTC 869463 || || || || || || |||||||| Sbjct 574634 AGTATCAATGAGCAGAGAGTAGGTCTC 574608 Score = 98.7 bits (108), Expect = 1e-14 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 1852044 CGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTGAGGCCCGGCACGA 1852103 ||||||||||| || || ||| |||||| || | || |||||| || || || | Sbjct 1295744 CGATCTTGGAGTTGGGGTCAGAGGCAGACATCTTACCACCCTGGGTGAGACCGGGAACCA 1295803 Query 1852104 GCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGTCGCGCGCAA 1852163 ||||| | || ||| |||||| || |||| | | ||||| || |||| Sbjct 1295804 TAGGGTTCATCATGTGTGCTCGCTTCTTGTAACCGATGGAGGTCAGGTTCTCCTCGGCAA 1295863 Query 1852164 AGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCT 1852223 | || ||||| |||||||| || ||||||||||| |||||| | |||| || || Sbjct 1295864 GAACGAAAATCTTTCGCTGGTCAACACCACCAAACTGGGCATCGACGCCAAGGTACTCCT 1295923 Query 1852224 CGTCGAGGGCCTGCATGAGCGGGTAGA 1852250 |||| || ||||||||||| ||||||| Sbjct 1295924 CGTCAAGAGCCTGCATGAGAGGGTAGA 1295950 Score = 96.9 bits (106), Expect = 4e-14 Identities = 209/305 (69%), Gaps = 7/305 (2%) Strand=Plus/Minus Query 868708 CACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAA 868767 ||| ||| |||||| ||||||||||| || | || || || |||||| | || Sbjct 575186 CACTCGCTTCTCGAAGAAGTTGGTCTTTCCAGCCAGAGAAATGTTCTCCATGAAGTCAAA 575127 Query 868768 CGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGAC 868827 ||||||| | |||||| ||| | ||| || | | ||||| |||||||| || Sbjct 575126 GGGGTTGGTGGAGTTGTAGACCTTGGGGTTTCCAAGAGCAACAAGCAGACGGTCGGCCAC 575067 Query 868828 AAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC-CGGCAGCG 868886 |||||| |||||||| | |||||| ||||||||| |||| || |||| || || | Sbjct 575066 AAACTCAATGTACTGTCGCATGAGCTTGGCGTTCATACCGAGCAG-ACCACAAGGGAGAG 575008 Query 868887 ACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCTGGGCA--C 868944 || | | ||||| | ||| || | || |||||||| |||| | ||| | || | Sbjct 575007 CATCAGTAAGGAACTCCTGCTCAATGCCAACAGCCTCGACAATGA-CGTCCTCGACAATC 574949 Query 868945 GTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAGTGCA- 869003 || ||||| ||| |||| | | ||||||| |||||||||||| ||||| Sbjct 574948 TTC-TTGGAGGGTCGGTTCTCGAGGTGAGAGAAGAGCAGACAGGCAAAGTCGGTGTGCAG 574890 Query 869004 ACCCT 869008 ||||| Sbjct 574889 ACCCT 574885 Score = 87.8 bits (96), Expect = 2e-11 Identities = 211/313 (67%), Gaps = 10/313 (3%) Strand=Plus/Minus Query 507581 CTCCAGATCGGGTGGTCGGTCGAGCGCCACCTGCGCGCGGGC---GACGCCGTGGTGATG 507637 || ||| ||| ||| ||| ||||| ||||| | || | ||| | ||| || | Sbjct 1501280 CTGCAGTACGGCTGGAAGGTGGAGCGTCACCT---CATGGACAATGACCCTGTGCTGTTC 1501224 Query 507638 AACCGGCAGCCGTCGCTGCACATGGGCTCCATGCTCATGCACAAGGTGGTGCCCATGCCC 507697 ||||| |||||||| ||||| | |||||| | ||| ||| |||||| Sbjct 1501223 AACCGACAGCCGTCTCTGCATAAAATGTCCATGATGGCGCATCGAGTGCGAGTCATGCC- 1501165 Query 507698 GGGCGC-ACCATGCGATTCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGG 507756 | | | ||| | ||| | |||||| | ||||| ||||||||||||| || ||||| Sbjct 1501164 GTACTCGACCTTCCGACTGAACCTGTCGGTCACTTCGCCCTACAACGCCGATTTCGACGG 1501105 Query 507757 CGACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGTGACGCACAC 507816 ||||| |||||| |||| ||||| ||||||||| |||| |||||| || | || | Sbjct 1501104 TGACGAAATGAACTTGCATGTGCCTCAGTCCGAGGAAACGCGAGCCGAGCTGTCCCA-GC 1501046 Query 507817 CATG-AGCGTGTCGCTCAAGACCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGCCTGG 507875 || | || | || ||| || || || ||| |||||||||| |||| || | | Sbjct 1501045 TGTGTATGGTCCCCCTGCAGATTGTCTCCCCCCAGTCCAACAAGCCTGTCATGGGTATTG 1500986 Query 507876 TCATGGACGCCCT 507888 | |||| |||| Sbjct 1500985 TGCAGGACACCCT 1500973 >seq1 Length=4845111 Score = 118 bits (130), Expect = 1e-20 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || || ||| | || || |||| ||||||||||| |||||||||||||| ||| | || Sbjct 4384169 CTTTTCGAGATCATTCTGACCGCAAACTACCTCGATATCAAGCCTCTGCTTGATGTCGGC 4384228 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 |||||| | || ||||||||||||||||||||| | ||||||||||| || ||||| Sbjct 4384229 TGCAAGACCGTCGCCAACATGATCAAGGGCAAGACCCCCGAGGAGATTCGACGAACCTTC 4384288 Query 1592288 AACAT 1592292 ||||| Sbjct 4384289 AACAT 4384293 Score = 116 bits (128), Expect = 5e-20 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | ||| || || ||||| ||||||||||| || | || Sbjct 760975 GCTTGGCCAGCTCTCCGGGGAGGATAAGTCGGACGGCAGTCTGGATCTCTCGAGAAGTGA 761034 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||| | || ||||| | |||||||||| | | || |||| | Sbjct 761035 TGGTGGACTTCTTGGTGTAGGTGGCCAGCTTGGAGGCCTCGGTGGCAACACGCTCGAAGA 761094 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | ||||||||||| |||||||||| ||||| | | ||||||| || |||||||| Sbjct 761095 TATCGTTGACAAAGGAGTTCATGATGGACATGGCTCGGGTGGAGATACCGGTGTCGGGGT 761154 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | |||||| ||||||||||||||| | || ||||| Sbjct 761155 GGGTCTGCTTCAGCACCTTGTAGATGTAAGAAGAGTA 761191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107137640771023