Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq5 118 1e-21 seq1 109 5e-19 >seq5 Length=2743614 Score = 118 bits (130), Expect = 1e-21 Identities = 357/546 (65%), Gaps = 8/546 (1%) Strand=Plus/Minus Query 138436 ATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGA 138495 ||||| || ||| |||| || || || ||| || ||||| | || || || || Sbjct 1440563 ATGATTCGGTTTTTCATCTCTTCATTCCACATGCCCAGTTTGATGAGATCTTTCATGAGC 1440504 Query 138496 TATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTG 138555 || ||| | ||| |||||||||| || |||| || | ||| |||||| |||| Sbjct 1440503 CATTGGTTGACGACTAGAAATTCACCTGCTTGGACTCTTCGGAGGTAGATGTTGGAGGTG 1440444 Query 138556 AAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTAC 138615 | || ||||| | ||||| | || ||||| |||| |||| || || ||||| Sbjct 1440443 TATGGTTCAAAACACTCGTTATGACCTAGAATTTGAGAAGTGGAAGCTGTAGGCATAGGA 1440384 Query 138616 GCCACCAAAAGAGAATTCCGTAAACCGTGAA-GCTT-GATTCGTTCCTTGAGCGACGACC 138673 || || | ||||| || | | |||||| ||| | || || |||||| | |||| Sbjct 1440383 GCTACTAGTAGAGAGTTTCTCATACCGTGTTTGCTCAGTTTACTT--TTGAGCAATGACC 1440326 Query 138674 AGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTG 138733 | ||||||||||| ||| | |||||||||| ||| |||| | | ||| ||| | Sbjct 1440325 AATCCCACAAATCAGAAGGAGTCTTGTTCCACAAATCAAACTGCAGTTTACCCTGACTAG 1440266 Query 138734 CGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCT 138793 | ||||| |||| ||| || || || || ||||| || ||||| || |||| Sbjct 1440265 CAGGACTTCCTTGGTATGATTCATACGGTCCTAACTCAGCAGCTAACTCAATGGAAGCCT 1440206 Query 138794 CGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGG--GCCTCGGC 138851 | ||| ||| ||| || ||||| ||| || ||| | | || | || || || Sbjct 1440205 CACAAGCAGCATGGTAGATTGTTTCAAAAATGAGCACATTCA--ATTCTGAAGCTTCTGC 1440148 Query 138852 GCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCC 138911 || |||||||| | || || | ||| | || |||| ||||| || ||||| | Sbjct 1440147 TGAATCATACGGCATCTGCAGTTTCATAAACACATCTGCCAAGCCTTGAACACCCACAGC 1440088 Query 138912 GACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATC 138971 | ||| | ||| | | || || | || || | | || ||| ||| ||||| |||| Sbjct 1440087 AATAGGTCTATGTCTCTTGTTAGAGGTTTCAGCCTCCTTGACAGGGTAACAGTTTGCATC 1440028 Query 138972 GATGAT 138977 ||||| Sbjct 1440027 AATGAT 1440022 >seq1 Length=4845111 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || ||||| || || || || || || || Sbjct 2006757 ATGCAGATCTTTGTCAAGACTCTGACTGGAAAGACTATCACTCTTGAGGTTGAGTCCTCC 2006698 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 2006697 GACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 2006638 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| ||||| || ||||| ||||| ||| | | || || |||||| Sbjct 2006637 CAGCGACTTATCTTCGCCGGTAAGCAGCTTGAGGACGGACGAACCCTTTCTGACTATAAC 2006578 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || ||| | ||| | ||| | || || ||| Sbjct 2006577 ATCCAGAAGGAATCCACTCTCCACCTTGTGCTCCGACTCCGAGGTGGC 2006530 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || ||||| || || | | Sbjct 2007180 ATGCAGATCTTTGTCAAGACTCTGACTGGAAAGACCATCACCCTCGAGGTTGAGTCTTCT 2007121 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || ||||| || || || || Sbjct 2007120 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAG 2007061 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| ||||| || ||||| |||||| ||| |||| ||||| ||| Sbjct 2007060 CAGCGACTTATCTTCGCCGGTAAGCAGCTTGAGGATGGACGAACTCTGTCTGATTACAAC 2007001 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || || ||||| || || || || Sbjct 2007000 ATCCAGAAGGAGTCCACCCTTCA 2006978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897493149320