Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016-
03-01] 19 sequences; 21,758,297 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq5 118 1e-21
seq1 109 5e-19
>seq5
Length=2743614
Score = 118 bits (130), Expect = 1e-21
Identities = 357/546 (65%), Gaps = 8/546 (1%)
Strand=Plus/Minus
Query 138436 ATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGA 138495
||||| || ||| |||| || || || ||| || ||||| | || || || ||
Sbjct 1440563 ATGATTCGGTTTTTCATCTCTTCATTCCACATGCCCAGTTTGATGAGATCTTTCATGAGC 1440504
Query 138496 TATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTG 138555
|| ||| | ||| |||||||||| || |||| || | ||| |||||| ||||
Sbjct 1440503 CATTGGTTGACGACTAGAAATTCACCTGCTTGGACTCTTCGGAGGTAGATGTTGGAGGTG 1440444
Query 138556 AAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTAC 138615
| || ||||| | ||||| | || ||||| |||| |||| || || |||||
Sbjct 1440443 TATGGTTCAAAACACTCGTTATGACCTAGAATTTGAGAAGTGGAAGCTGTAGGCATAGGA 1440384
Query 138616 GCCACCAAAAGAGAATTCCGTAAACCGTGAA-GCTT-GATTCGTTCCTTGAGCGACGACC 138673
|| || | ||||| || | | |||||| ||| | || || |||||| | ||||
Sbjct 1440383 GCTACTAGTAGAGAGTTTCTCATACCGTGTTTGCTCAGTTTACTT--TTGAGCAATGACC 1440326
Query 138674 AGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTG 138733
| ||||||||||| ||| | |||||||||| ||| |||| | | ||| ||| |
Sbjct 1440325 AATCCCACAAATCAGAAGGAGTCTTGTTCCACAAATCAAACTGCAGTTTACCCTGACTAG 1440266
Query 138734 CGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCT 138793
| ||||| |||| ||| || || || || ||||| || ||||| || ||||
Sbjct 1440265 CAGGACTTCCTTGGTATGATTCATACGGTCCTAACTCAGCAGCTAACTCAATGGAAGCCT 1440206
Query 138794 CGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGG--GCCTCGGC 138851
| ||| ||| ||| || ||||| ||| || ||| | | || | || || ||
Sbjct 1440205 CACAAGCAGCATGGTAGATTGTTTCAAAAATGAGCACATTCA--ATTCTGAAGCTTCTGC 1440148
Query 138852 GCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCC 138911
|| |||||||| | || || | ||| | || |||| ||||| || ||||| |
Sbjct 1440147 TGAATCATACGGCATCTGCAGTTTCATAAACACATCTGCCAAGCCTTGAACACCCACAGC 1440088
Query 138912 GACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATC 138971
| ||| | ||| | | || || | || || | | || ||| ||| ||||| ||||
Sbjct 1440087 AATAGGTCTATGTCTCTTGTTAGAGGTTTCAGCCTCCTTGACAGGGTAACAGTTTGCATC 1440028
Query 138972 GATGAT 138977
|||||
Sbjct 1440027 AATGAT 1440022
>seq1
Length=4845111
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || || || || || ||||| || || || || || || ||
Sbjct 2006757 ATGCAGATCTTTGTCAAGACTCTGACTGGAAAGACTATCACTCTTGAGGTTGAGTCCTCC 2006698
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| || || || || || || ||
Sbjct 2006697 GACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 2006638
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || | ||||| ||||| || ||||| ||||| ||| | | || || ||||||
Sbjct 2006637 CAGCGACTTATCTTCGCCGGTAAGCAGCTTGAGGACGGACGAACCCTTTCTGACTATAAC 2006578
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
|| || |||||||| || || ||| | ||| | ||| | || || |||
Sbjct 2006577 ATCCAGAAGGAATCCACTCTCCACCTTGTGCTCCGACTCCGAGGTGGC 2006530
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || || || || || || || || ||||| || || | |
Sbjct 2007180 ATGCAGATCTTTGTCAAGACTCTGACTGGAAAGACCATCACCCTCGAGGTTGAGTCTTCT 2007121
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||| || ||||| || ||||| || || || ||
Sbjct 2007120 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAG 2007061
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || | ||||| ||||| || ||||| |||||| ||| |||| ||||| |||
Sbjct 2007060 CAGCGACTTATCTTCGCCGGTAAGCAGCTTGAGGATGGACGAACTCTGTCTGATTACAAC 2007001
Query 24884 ATTCAAAAGGAATCGACACTACA 24906
|| || ||||| || || || ||
Sbjct 2007000 ATCCAGAAGGAGTCCACCCTTCA 2006978
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449897493149320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |