Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 3e-14 seq1 84.2 2e-11 >seq2 Length=4150472 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 107557 TGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGCG 107616 ||||||| |||||||| || | || ||||| ||||| ||| |||| |||| || || Sbjct 3375034 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCG 3374975 Query 107617 ATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGC 107676 | || | | | | || || ||||| || || || ||| | ||| ||| |||| Sbjct 3374974 ACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGC 3374915 Query 107677 AGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACA 107736 || |||| |||| || || || ||||| ||||||| | ||| | | |||||||||| Sbjct 3374914 AGCGACTCATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTCTCTGACTACAACA 3374855 Query 107737 TTCAAAAGGAGTCTAC 107752 | || |||||||| || Sbjct 3374854 TCCAGAAGGAGTCCAC 3374839 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 107554 AAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTG 107613 ||||||| ||||||||||| || | || || || || || ||| | || |||| || Sbjct 3070389 AAATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTT 3070448 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||| || ||| | | || || ||||| || || || || | ||| ||| | Sbjct 3070449 CCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACC 3070508 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||| ||||||| | || ||||| ||||| ||||||| | ||| | | ||||||| Sbjct 3070509 AGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACA 3070568 Query 107734 ACATTCAAAAGGAGTCTAC 107752 |||| || |||||||| || Sbjct 3070569 ACATCCAGAAGGAGTCCAC 3070587 >seq1 Length=4845111 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 105090 GGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCCGGCGAGCAC 105149 ||||| ||||| |||||||| || || | || |||||||||||| ||||||||| ||| Sbjct 2763556 GGCTTCCACGTGCACGAGTTTGGAGACAACACCAACGGCTGCACCTCCGCCGGCCCCCAC 2763615 Query 105150 TTCAA-CCCTACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAAAGGCACGTCGGCGA 105208 ||||| |||| | | | || ||||| || || ||| | | || | ||||| || || Sbjct 2763616 TTCAACCCCTTCAAG-AAGAACCACGGAGCCCCCAACGACACTGAGCGACACGTTGGAGA 2763674 Query 105209 CCTGGGCAATGTC 105221 ||| ||||| ||| Sbjct 2763675 CCTCGGCAACGTC 2763687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398876707635091