Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5 87.8 4e-12 >seq5 Length=2743614 Score = 87.8 bits (96), Expect = 4e-12 Identities = 289/442 (65%), Gaps = 18/442 (4%) Strand=Plus/Plus Query 110458 AGAAAGCT-ATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTG 110516 |||||| | | ||||||| |||||||| | || || ||||| ||| | || || | Sbjct 1439101 AGAAAGTTCACTCATGCTTCTCCTACCTTGTTCAATGCAGGTACTCCTCAGGGTCAGCTT 1439160 Query 110517 GCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTT 110576 | || || ||||| | | || | || || ||||| || || || || | || Sbjct 1439161 TCGTCCTGTTTTCTCGTTGCCATGGCAGCAGACTCCATTGACGGCATCTACGACACGCTC 1439220 Query 110577 AAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATT 110636 ||| ||||| ||||| |||| | ||||| || ||| | || |||| | || Sbjct 1439221 AAAACGTGTGCTCAGATTTCCAAAACAGCAGGAGGTATAGGTCTGCATATTCACAACATC 1439280 Query 110637 CGCTCAAAAGGAGCAAATATCGCAACAGCG----AAGGGTG--CTTCAACTGGACTTGTT 110690 | | |||||||| | || |||| |||| | ||||| || | ||| Sbjct 1439281 AGAGCCAAAGGAGC---TCTCATTACAGGTTCTCAAGGACGGTCTTCA---GGTATCGTT 1439334 Query 110691 CCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA---GA 110747 || ||| | ||||| |||||| | || ||| || || ||||||| || || | || Sbjct 1439335 CCCATGCTCAGAGTGTTCAACAATACCGCACGGTACGTTGATCAAGGGGGAAACAAACGA 1439394 Query 110748 AATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAA 110807 ||| | ||||| | ||| | || ||||||||| | ||||| |||| ||| | ||| Sbjct 1439395 CCTGGAGCGTTTGCAGTGTATTTGGAGCCTTGGCATGCGGATAT-TTTGGATTTTCTGAA 1439453 Query 110808 CTT-CGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTG 110866 || || |||||||| || || ||| | ||||||||||| | || ||||| | || Sbjct 1439454 TTTGCGAAAAAATCATGGCGCAGAGGAAAACAGAGCACGTGACCTGTTCTATGCTCTCTG 1439513 Query 110867 GATTTCAGATTTATTCATGAAA 110888 | | | ||||| || |||||| Sbjct 1439514 GGTGCCTGATTTGTTTATGAAA 1439535 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/140 (74%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 112986 AAACATGGAACTACAAACTCTCTACTGTTGGCACCAATGCCTACAGCTTCGACTGCACAG 113045 ||||| || | | |||||||||||| | || || |||||||||||||| ||| | || Sbjct 1440352 AAACACGGTATGAGAAACTCTCTACTAGTAGCTCCTATGCCTACAGCTTCCACTTCTCAA 1440411 Query 113046 ATTCTCGGTAATAATGAATGTTTCGAGCCAATTACAAGT--AATATTTATGTCCGACGTG 113103 ||||| ||| |||| || ||||| || ||| |||| | || || || ||||| | | Sbjct 1440412 ATTCTAGGTCATAACGAGTGTTTTGAACCA--TACACCTCCAACATCTACCTCCGAAGAG 1440469 Query 113104 TTCTAGCAGGTGAGTTTGTA 113123 | | ||||||||| ||| || Sbjct 1440470 TCCAAGCAGGTGAATTTCTA 1440489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812511085259