Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1 129 1e-24 seq2 107 5e-18 >seq1 Length=4845111 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || ||||| || ||||| | || || || ||||||| Sbjct 2007177 CAGATCTTTGTCAAGACTCTGACTGGAAAGACCATCACCCTCGAGGTTGAGTCTTCTGAC 2007118 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||| || || || |||||| |||||| || Sbjct 2007117 ACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAGCAG 2007058 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||||||||||||||| |||||| | || |||||| | ||| || | ||||||||| || Sbjct 2007057 CGACTTATCTTCGCCGGTAAGCAGCTTGAGGATGGACGAACTCTGTCTGATTACAACATC 2006998 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| ||||| || ||||| || || | |||||||| Sbjct 2006997 CAGAAGGAGTCCACCCTTCATCTCGTCCTCCGACTTCGA 2006959 Score = 107 bits (118), Expect = 5e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| ||||| || || || | || || || || ||||| | || Sbjct 2007393 AAGACCCTCACTGGAAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACCATTGACAAT 2007334 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || |||||| |||||| || |||| || ||| Sbjct 2007333 GTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAGCAGCGACTCATTTTC 2007274 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | ||||||||| | ||| || |||| |||||| ||||||| |||||| Sbjct 2007273 GCTGGTAAGCAGCTCGAAGATGGACGAACTCTGTCCGACTACAACATCCAGAAGGAGTCT 2007214 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| || || || | |||||||| Sbjct 2007213 ACTCTCCATCTGGTCCTTCGACTTCGA 2007187 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || ||||| || |||||| | || || || || ||| Sbjct 2006754 CAGATCTTTGTCAAGACTCTGACTGGAAAGACTATCACTCTTGAGGTTGAGTCCTCCGAC 2006695 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || || |||||| || Sbjct 2006694 ACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAG 2006635 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||||||||||||||| |||||| | || || ||| | || | | || || ||| || Sbjct 2006634 CGACTTATCTTCGCCGGTAAGCAGCTTGAGGACGGACGAACCCTTTCTGACTATAACATC 2006575 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| || || ||||| |||||||| | |||| ||| Sbjct 2006574 CAGAAGGAATCCACTCTCCACCTTGTGCTCCGACTCCGA 2006536 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 |||||||| | || || ||||| || ||||| ||||||| || || |||| || ||| Sbjct 2006959 TCGAAGTCGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAGAGT 2007018 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||| || |||||||| |||||||||||||| || || || Sbjct 2007019 TCGTCCATCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTG 2007063 >seq2 Length=4150472 Score = 107 bits (118), Expect = 5e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || || || || ||||| | || ||||| ||| ||| Sbjct 3070394 CAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCCGAC 3070453 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || |||||| |||||| || Sbjct 3070454 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAGCAG 3070513 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||||||||||||||| |||||| | || || || | || | | || |||||| || Sbjct 3070514 CGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAACATC 3070573 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| ||||| ||||| || || ||| || |||| ||| Sbjct 3070574 CAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGA 3070612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820512300499